Issues 共 114
Add inDrops support
#549 · nictru · 2026-05-26
`CELLRANGER_MKVDJREF` and `CELLRANGER_MULTI` failing in the tests
#529 · delfiterradas · 2026-03-11
cell type annotation
#528 · simroka · 2026-03-10
BD Rhapsody support?
#527 · simroka · 2026-03-10
Add velocyto for cellranger output
#525 · simroka · 2026-03-10
Protocol/chemistry isn't processed for cellranger multi
#522 · tgelafr-pfzr · 2026-02-24
simpleaf quant Error in checkAlevinFryInputFiles(mapDir = mapDir, permitDir = permitDir, :
#518 · Manonboo089 · 2026-01-22
Singleplex Flex data cannot be processed because probeset file is not added to config
#515 · tgelafr-pfzr · 2026-01-12
Early validation of `--cellranger_multi_barcodes`
#512 · tgelafr-pfzr · 2025-12-23
check_cellrangermulti.py doesn't handle BOM
#510 · tgelafr-pfzr · 2025-12-02