Issues 共 263
filter: ambiguity in date ranges is not properly handled
#2007 · victorlin · 2026-06-02
curate format-dates: support date ranges
#2000 · joverlee521 · 2026-05-18
CI tests take too long
#1994 · jameshadfield · 2026-05-13
Config based Augur commands
#1987 · joverlee521 · 2026-05-04
is there a way to give protein sites non-sequential numbering?
#1968 · jbloom · 2026-03-02
multiple inputs: include source attribution
#1965 · jameshadfield · 2026-02-26
frequencies: Unhandled error with missing or invalid dates
#1960 · victorlin · 2026-02-12
Remove workaround for CVXOPT binaries on Python 3.14
#1952 · victorlin · 2026-01-26
filter: Remove deprecated `--output` and `-o` options
#1949 · victorlin · 2026-01-23
Remove Sphinx <9.0.0 pin
#1947 · victorlin · 2026-01-20