* 2.0.1 ## What's Changed * Update Model-class.R by @TJaki in https://github.com/openpharma/crmPack/pull/3 * Update Model-class.R by @TJaki in https://github.com/openpharma/crmPack/pull/4 * Add Github actions, remove docs by @cicdguy in https://github.com/openpharma/crmPack/pull/13 * 7: Merge integration branch into main. by @danielinteractive in https://github.com/openpharma/crmPack/pull/12 * Added lifcycle related figures + modify man of Validate() by @wwojciech in https://github.com/openpharma/crmPack/pull/14 * Set up the package to use testthat + Rproj file by @wwojciech in https://github.com/openpharma/crmPack/pull/15 * Clean-up Validate class by @wwojciech in https://github.com/openpharma/crmPack/pull/16 * 11_GeneralData_revise_help_add_unit_tests_refactor_the_code by @wwojciech in https://github.com/openpharma/crmPack/pull/17 * Create clean_up.md by @danielinteractive in https://github.com/openpharma/crmPack/pull/18 * Update issue templates by @danielinteractive in https://github.com/openpharma/crmPack/pull/19 * 20 Data clean up by @wwojciech in https://github.com/openpharma/crmPack/pull/25 * Closes #21 by @wwojciech in https://github.com/openpharma/crmPack/pull/27 * Use reusable workflows by @cicdguy in https://github.com/openpharma/crmPack/pull/26 * Closes #22 by @wwojciech in https://github.com/openpharma/crmPack/pull/28 * Closes #23 by @wwojciech in https://github.com/openpharma/crmPack/pull/29 * Closes #24 by @wwojciech in https://github.com/openpharma/crmPack/pull/32 * Closes #36 by @wwojciech in https://github.com/openpharma/crmPack/pull/37 * Update GHA workflows by @cicdguy in https://github.com/openpharma/crmPack/pull/39 * Closes #33 by @wwojciech in https://github.com/openpharma/crmPack/pull/38 * Closes #34 by @wwojciech in https://github.com/openpharma/crmPack/pull/40 * Closes #35 by @wwojciech in https://github.com/openpharma/crmPack/pull/41 * Closes #42 by @wwojciech in https://github.com/openpharma/crmPack/pull/47 * Closes #43 by @wwojciech in https://github.com/openpharma/crmPack/pull/48 * Closes #44 by @wwojciech in https://github.com/openpharma/crmPack/pull/49 * Closes #45 by @wwojciech in https://github.com/openpharma/crmPack/pull/50 * Closes #46 by @wwojciech in https://github.com/openpharma/crmPack/pull/53 * Closes #54 by @wwojciech in https://github.com/openpharma/crmPack/pull/58 * add logo to README by @danielinteractive in https://github.com/openpharma/crmPack/pull/59 * Closes #55 by @wwojciech in https://github.com/openpharma/crmPack/pull/60 * Closes #56 by @wwojciech in https://github.com/openpharma/crmPack/pull/61 * Closes #57 by @wwojciech in https://github.com/openpharma/crmPack/pull/70 * Closes #66 by @wwojciech in https://github.com/openpharma/crmPack/pull/72 * Closes #67 by @wwojciech in https://github.com/openpharma/crmPack/pull/74 * Closes #63 by @wwojciech in https://github.com/openpharma/crmPack/pull/75 * Closes #76 by @wwojciech in https://github.com/openpharma/crmPack/pull/77 * Closes #64 by @wwojciech in https://github.com/openpharma/crmPack/pull/78 * Closes #64 - update by @wwojciech in https://github.com/openpharma/crmPack/pull/80 * Closes #68 by @wwojciech in https://github.com/openpharma/crmPack/pull/81 * Closes #82 by @wwojciech in https://github.com/openpharma/crmPack/pull/83 * Closes #69 by @wwojciech in https://github.com/openpharma/crmPack/pull/84 * Closes #91 by @wwojciech in https://github.com/openpharma/crmPack/pull/92 * Closes #65 by @wwojciech in https://github.com/openpharma/crmPack/pull/95 * Closes #88 by @wwojciech in https://github.com/openpharma/crmPack/pull/96 * Closes #87 by @wwojciech in https://github.com/openpharma/crmPack/pull/97 * Closes #86 by @wwojciech in https://github.com/openpharma/crmPack/pull/98 * Closes #100 by @wwojciech in https://github.com/openpharma/crmPack/pull/101 * 93: Initial implementation of the stopping rule based on MTD precision by @0liver0815 in https://github.com/openpharma/crmPack/pull/99 * 85: increments num dose levels extension by @DimKon5 in https://github.com/openpharma/crmPack/pull/102 * 103: Make `dose` and `prob` usual S4 methods by @wwojciech in https://github.com/openpharma/crmPack/pull/105 * Closes #113 by @wwojciech in https://github.com/openpharma/crmPack/pull/121 * New increment rule IncrementsHSRBeta by @0liver0815 in https://github.com/openpharma/crmPack/pull/119 * Add stopping rule StoppingLowestDoseHSRBeta by @0liver0815 in https://github.com/openpharma/crmPack/pull/120 * Streamline code by @0liver0815 in https://github.com/openpharma/crmPack/pull/126 * Closes #128 by @0liver0815 in https://github.com/openpharma/crmPack/pull/129 * Closes #114 by @wwojciech in https://github.com/openpharma/crmPack/pull/127 * 62: implement IncrementsRelativeDLTCumulative by @danielinteractive in https://github.com/openpharma/crmPack/pull/71 * Closes #115 + corrections for #62 by @wwojciech in https://github.com/openpharma/crmPack/pull/130 * Closes #116 by @wwojciech in https://github.com/openpharma/crmPack/pull/133 * Closes #132 by @wwojciech in https://github.com/openpharma/crmPack/pull/134 * Closes #131 by @wwojciech in https://github.com/openpharma/crmPack/pull/135 * Closes #136 by @wwojciech in https://github.com/openpharma/crmPack/pull/138 * Closes #117 by @wwojciech in https://github.com/openpharma/crmPack/pull/141 * Closes #118 by @wwojciech in https://github.com/openpharma/crmPack/pull/143 * Closes #142 by @wwojciech in https://github.com/openpharma/crmPack/pull/148 * Closes #144 by @wwojciech in https://github.com/openpharma/crmPack/pull/153 * Closes #159 by @wwojciech in https://github.com/openpharma/crmPack/pull/160 * adding LogisticKadaneBetaGamma in the package by @DimKon5 in https://github.com/openpharma/crmPack/pull/156 * Closes #145 by @wwojciech in https://github.com/openpharma/crmPack/pull/161 * Closes #146 by @wwojciech in https://github.com/openpharma/crmPack/pull/163 * Closes #147 by @wwojciech in https://github.com/openpharma/crmPack/pull/166 * Closes #162 by @wwojciech in https://github.com/openpharma/crmPack/pull/167 * Closes #168 by @wwojciech in https://github.com/openpharma/crmPack/pull/170 * Closes #171 by @wwojciech in https://github.com/openpharma/crmPack/pull/172 * Closes #173 by @wwojciech in https://github.com/openpharma/crmPack/pull/174 * Closes #176 by @wwojciech in https://github.com/openpharma/crmPack/pull/179 * Closes #177 by @wwojciech in https://github.com/openpharma/crmPack/pull/180 * Closes #181 by @wwojciech in https://github.com/openpharma/crmPack/pull/182 * Closes #178 by @wwojciech in https://github.com/openpharma/crmPack/pull/186 * Closes #191 by @wwojciech in https://github.com/openpharma/crmPack/pull/192 * Closes #187 by @wwojciech in https://github.com/openpharma/crmPack/pull/198 * Closes #188 by @wwojciech in https://github.com/openpharma/crmPack/pull/199 * Closes #201 by @wwojciech in https://github.com/openpharma/crmPack/pull/203 * Closes #202 by @wwojciech in https://github.com/openpharma/crmPack/pull/205 * Closes #206 (removed AllModels class) by @wwojciech in https://github.com/openpharma/crmPack/pull/207 * Closes #208 by @wwojciech in https://github.com/openpharma/crmPack/pull/209 * Closes #210 by @wwojciech in https://github.com/openpharma/crmPack/pull/211 * Closes #212 by @wwojciech in https://github.com/openpharma/crmPack/pull/214 * Closes #216 by @wwojciech in https://github.com/openpharma/crmPack/pull/217 * Closes #218 by @wwojciech in https://github.com/openpharma/crmPack/pull/219 * Closes #221 by @wwojciech in https://github.com/openpharma/crmPack/pull/224 * Closes #223 by @wwojciech in https://github.com/openpharma/crmPack/pull/225 * Closes #215 by @wwojciech in https://github.com/openpharma/crmPack/pull/226 * Adding Information Theoretic Rule by @pc494 in https://github.com/openpharma/crmPack/pull/158 * Closes #227 by @wwojciech in https://github.com/openpharma/crmPack/pull/228 * Closes #229 by @wwojciech in https://github.com/openpharma/crmPack/pull/230 * Closes #231 by @wwojciech in https://github.com/openpharma/crmPack/pull/234 * Closes #232 by @wwojciech in https://github.com/openpharma/crmPack/pull/235 * Closes #236 by @wwojciech in https://github.com/openpharma/crmPack/pull/237 * Closes #238 by @wwojciech in https://github.com/openpharma/crmPack/pull/244 * Closes #239 by @wwojciech in https://github.com/openpharma/crmPack/pull/246 * Closes #245 by @wwojciech in https://github.com/openpharma/crmPack/pull/247 * Closes #241 by @wwojciech in https://github.com/openpharma/crmPack/pull/248 * Closes #249 (custom checkmate - probability) by @wwojciech in https://github.com/openpharma/crmPack/pull/250 * Closes #251 by @wwojciech in https://github.com/openpharma/crmPack/pull/252 * Closes #233 by @wwojciech in https://github.com/openpharma/crmPack/pull/253 * Closes #255 by @wwojciech in https://github.com/openpharma/crmPack/pull/256 * Closes #254 by @wwojciech in https://github.com/openpharma/crmPack/pull/258 * Closes #259 by @wwojciech in https://github.com/openpharma/crmPack/pull/262 * Closes #263 (draft PR) by @wwojciech in https://github.com/openpharma/crmPack/pull/266 * Closes #264 by @wwojciech in https://github.com/openpharma/crmPack/pull/267 * Closes #268 by @wwojciech in https://github.com/openpharma/crmPack/pull/269 * Closes #270 by @wwojciech in https://github.com/openpharma/crmPack/pull/271 * Closes #109 (new branch based on latest main) by @gunhanb in https://github.com/openpharma/crmPack/pull/257 * Closes #272 by @wwojciech in https://github.com/openpharma/crmPack/pull/273 * Closes #275 by @wwojciech in https://github.com/openpharma/crmPack/pull/276 * Closes #277 by @wwojciech in https://github.com/openpharma/crmPack/pull/278 * Closes #279 by @wwojciech in https://github.com/openpharma/crmPack/pull/281 * Closes #282 by @wwojciech in https://github.com/openpharma/crmPack/pull/284 * Closes #285 by @wwojciech in https://github.com/openpharma/crmPack/pull/286 * 108: design for stopping rule evaluated at specific dose design doc by @danielinteractive in https://github.com/openpharma/crmPack/pull/283 * Closes #288 by @wwojciech in https://github.com/openpharma/crmPack/pull/291 * Closes #292 by @wwojciech in https://github.com/openpharma/crmPack/pull/293 * Closes #294 by @wwojciech in https://github.com/openpharma/crmPack/pull/295 * Closes #289 by @wwojciech in https://github.com/openpharma/crmPack/pull/296 * Closes #261 by @wwojciech in https://github.com/openpharma/crmPack/pull/297 * Closes #298 by @wwojciech in https://github.com/openpharma/crmPack/pull/299 * Closes #287 by @wwojciech in https://github.com/openpharma/crmPack/pull/300 * Closes #280 by @wwojciech in https://github.com/openpharma/crmPack/pull/301 * Closes #302 by @wwojciech in https://github.com/openpharma/crmPack/pull/303 * Closes #304 by @wwojciech in https://github.com/openpharma/crmPack/pull/307 * Closes #306 by @wwojciech in https://github.com/openpharma/crmPack/pull/309 * Closes #310 by @wwojciech in https://github.com/openpharma/crmPack/pull/311 * Closes #312 by @wwojciech in https://github.com/openpharma/crmPack/pull/313 * Closes #314 by @wwojciech in https://github.com/openpharma/crmPack/pull/315 * Closes #317 by @wwojciech in https://github.com/openpharma/crmPack/pull/318 * Closes #316 by @wwojciech in https://github.com/openpharma/crmPack/pull/327 * Closes #328 by @wwojciech in https://github.com/openpharma/crmPack/pull/329 * Closes #330 by @wwojciech in https://github.com/openpharma/crmPack/pull/331 * Closes #332 by @wwojciech in https://github.com/openpharma/crmPack/pull/333 * Closes #334 by @wwojciech in https://github.com/openpharma/crmPack/pull/336 * enlarge the space for seeds for simulations by @reikoch in https://github.com/openpharma/crmPack/pull/339 * Closes #337 by @wwojciech in https://github.com/openpharma/crmPack/pull/340 * Closes #341 by @wwojciech in https://github.com/openpharma/crmPack/pull/343 * Closes #344 by @wwojciech in https://github.com/openpharma/crmPack/pull/346 * Closes #345 by @wwojciech in https://github.com/openpharma/crmPack/pull/347 * Closes #348 by @wwojciech in https://github.com/openpharma/crmPack/pull/349 * Closes #350 by @wwojciech in https://github.com/openpharma/crmPack/pull/353 * Closes #351 by @wwojciech in https://github.com/openpharma/crmPack/pull/354 * Closes #352 by @wwojciech in https://github.com/openpharma/crmPack/pull/355 * Closes #356 by @wwojciech in https://github.com/openpharma/crmPack/pull/357 * Closes #358 by @wwojciech in https://github.com/openpharma/crmPack/pull/366 * Closes #361 by @wwojciech in https://github.com/openpharma/crmPack/pull/371 * Closes #375 by @wwojciech in https://github.com/openpharma/crmPack/pull/376 * Closes #377 by @wwojciech in https://github.com/openpharma/crmPack/pull/378 * Closes #365 by @wwojciech in https://github.com/openpharma/crmPack/pull/379 * Closes #362 by @wwojciech in https://github.com/openpharma/crmPack/pull/381 * Closes #387 by @wwojciech in https://github.com/openpharma/crmPack/pull/389 * Closes #388 by @wwojciech in https://github.com/openpharma/crmPack/pull/391 * 108 stopping rule assessed at specific dose v2 #305 by @DimKon5 in https://github.com/openpharma/crmPack/pull/382 * Closes #363 assert_true checks not correct. After discussion the whole method for… by @0liver0815 in https://github.com/openpharma/crmPack/pull/369 * Closes #367 Change rule from 1 to 2 to return always a value by @0liver0815 in https://github.com/openpharma/crmPack/pull/368 * Closes #393 by @wwojciech in https://github.com/openpharma/crmPack/pull/396 * Closes #397 by @wwojciech in https://github.com/openpharma/crmPack/pull/400 * Closes #399 by @wwojciech in https://github.com/openpharma/crmPack/pull/402 * Closes #392 by @wwojciech in https://github.com/openpharma/crmPack/pull/404 * Closes #395 by @wwojciech in https://github.com/openpharma/crmPack/pull/409 * Closes #410 by @wwojciech in https://github.com/openpharma/crmPack/pull/411 * Closes #412 by @wwojciech in https://github.com/openpharma/crmPack/pull/416 * Closes #364 by @wwojciech in https://github.com/openpharma/crmPack/pull/417 * Update workflows by @cicdguy in https://github.com/openpharma/crmPack/pull/415 * Closes #414 by @wwojciech in https://github.com/openpharma/crmPack/pull/419 * Closes #418 by @wwojciech in https://github.com/openpharma/crmPack/pull/420 * Closes #421 by @wwojciech in https://github.com/openpharma/crmPack/pull/422 * Closes #413 by @wwojciech in https://github.com/openpharma/crmPack/pull/425 * Closes #423 by @wwojciech in https://github.com/openpharma/crmPack/pull/428 * Closes #427 by @wwojciech in https://github.com/openpharma/crmPack/pull/429 * Closes #430 by @wwojciech in https://github.com/openpharma/crmPack/pull/431 * Closes #432 by @wwojciech in https://github.com/openpharma/crmPack/pull/434 * Closes #433 by @wwojciech in https://github.com/openpharma/crmPack/pull/436 * Documentation of NextBestNCRMLoss is corrected by @gunhanb in https://github.com/openpharma/crmPack/pull/440 * Closes #437 by @wwojciech in https://github.com/openpharma/crmPack/pull/442 * Closes #443 by @wwojciech in https://github.com/openpharma/crmPack/pull/444 * 321 add o quigley model from jss paper by @0liver0815 in https://github.com/openpharma/crmPack/pull/438 * Closes #445 by @wwojciech in https://github.com/openpharma/crmPack/pull/447 * Closes #439 by @wwojciech in https://github.com/openpharma/crmPack/pull/450 * Closes #449 by @wwojciech in https://github.com/openpharma/crmPack/pull/453 * Closes #448 by @wwojciech in https://github.com/openpharma/crmPack/pull/454 * Closes #452 by @wwojciech in https://github.com/openpharma/crmPack/pull/455 * Closes #451 by @wwojciech in https://github.com/openpharma/crmPack/pull/456 * Closes #446 by @wwojciech in https://github.com/openpharma/crmPack/pull/459 * Closes #457 by @0liver0815 in https://github.com/openpharma/crmPack/pull/458 * Closes #390 by @wwojciech in https://github.com/openpharma/crmPack/pull/461 * Update Roxygen Version by @cicdguy in https://github.com/openpharma/crmPack/pull/465 * 335 new test compare literature by @marlenesg in https://github.com/openpharma/crmPack/pull/424 * Closes #154 by @wwojciech in https://github.com/openpharma/crmPack/pull/463 * Closes #196 by @wwojciech in https://github.com/openpharma/crmPack/pull/466 * Closes #462 by @wwojciech in https://github.com/openpharma/crmPack/pull/468 * 319improve read me by @PuzzledFace in https://github.com/openpharma/crmPack/pull/374 * Closes #467 by @wwojciech in https://github.com/openpharma/crmPack/pull/471 * Closes #472 by @wwojciech in https://github.com/openpharma/crmPack/pull/475 * Closes #473 by @wwojciech in https://github.com/openpharma/crmPack/pull/476 * Remove CPU limit by @0liver0815 in https://github.com/openpharma/crmPack/pull/485 * 481+483 revise next best min dist by @0liver0815 in https://github.com/openpharma/crmPack/pull/486 * Closes #493 by @wwojciech in https://github.com/openpharma/crmPack/pull/494 * Test sas results by @marlenesg in https://github.com/openpharma/crmPack/pull/491 * Closes #474 by @wwojciech in https://github.com/openpharma/crmPack/pull/495 * Closes #499 by @wwojciech in https://github.com/openpharma/crmPack/pull/501 * Closes #496 by @wwojciech in https://github.com/openpharma/crmPack/pull/498 * Closes #503 by @wwojciech in https://github.com/openpharma/crmPack/pull/504 * Closes #506 by @wwojciech in https://github.com/openpharma/crmPack/pull/507 * Closes #502 by @wwojciech in https://github.com/openpharma/crmPack/pull/508 * 487 parallel computing with extensions by @0liver0815 in https://github.com/openpharma/crmPack/pull/497 * Closes #510 by @wwojciech in https://github.com/openpharma/crmPack/pull/511 * Closes #514 by @wwojciech in https://github.com/openpharma/crmPack/pull/515 * Closes #516 by @wwojciech in https://github.com/openpharma/crmPack/pull/518 * Closes #519 by @wwojciech in https://github.com/openpharma/crmPack/pull/521 * Closes #524 by @wwojciech in https://github.com/openpharma/crmPack/pull/525 * Closes #526 by @wwojciech in https://github.com/openpharma/crmPack/pull/527 * Closes #528 by @wwojciech in https://github.com/openpharma/crmPack/pull/530 * Closes #532 by @wwojciech in https://github.com/openpharma/crmPack/pull/533 * Closes #534 by @wwojciech in https://github.com/openpharma/crmPack/pull/535 * Closes #536 by @wwojciech in https://github.com/openpharma/crmPack/pull/537 * Closes #539 by @wwojciech in https://github.com/openpharma/crmPack/pull/542 * Updating README links by @dgkf in https://github.com/openpharma/crmPack/pull/548 * Add work-arounds for `covr` trace injections by @dgkf in https://github.com/openpharma/crmPack/pull/546 * 403 next best prob mtd by @0liver0815 in https://github.com/openpharma/crmPack/pull/484 * Creating a factory method for crmPack classes. by @PuzzledFace in https://github.com/openpharma/crmPack/pull/538 * add the doi information for the crmPack JSS paper to the Description by @dimitriskontosBAY in https://github.com/openpharma/crmPack/pull/556 * 553: Clean up DualResponsesSamplesDesign by @danielinteractive in https://github.com/openpharma/crmPack/pull/557 * 319improve read me by @PuzzledFace in https://github.com/openpharma/crmPack/pull/477 * 552: Explain stopReasons having NA etc. by @danielinteractive in https://github.com/openpharma/crmPack/pull/563 * Jk improve test coverage by @PuzzledFace in https://github.com/openpharma/crmPack/pull/567 * Fixing the spelling of the name of the `messgae` [sic] attribute... by @PuzzledFace in https://github.com/openpharma/crmPack/pull/568 * 565 the return value of stoptrial for stoppingtdciratio is incorrectly named by @PuzzledFace in https://github.com/openpharma/crmPack/pull/570 * 558: Fix checks and tests by @danielinteractive in https://github.com/openpharma/crmPack/pull/579 * 555 clean da design by @pengguanya in https://github.com/openpharma/crmPack/pull/574 * #554 clean test dual responses design by @dimitriskontosBAY in https://github.com/openpharma/crmPack/pull/580 * Sanity checks vignette by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/575 * Correct assert_probabilities call by @0liver0815 in https://github.com/openpharma/crmPack/pull/577 * Increases minimum {checkmate} version to the latest version as of tod… by @dimitriskontosBAY in https://github.com/openpharma/crmPack/pull/589 * Add explanations. by @0liver0815 in https://github.com/openpharma/crmPack/pull/592 * Closes #586 by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/595 * 571 cleanup general simulations by @pengguanya in https://github.com/openpharma/crmPack/pull/590 * 582 approximate samples generates plot output as a side effect by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/597 * 583 stopping rule na handling by @0liver0815 in https://github.com/openpharma/crmPack/pull/588 * Remove commented lines and add StoppingMissingDose by @0liver0815 in https://github.com/openpharma/crmPack/pull/603 * Add CamelCase snake_case motivation by @0liver0815 in https://github.com/openpharma/crmPack/pull/584 * 578 convert todo file into gh issues by @dimitriskontosBAY in https://github.com/openpharma/crmPack/pull/639 * Test sas results by @marlenesg in https://github.com/openpharma/crmPack/pull/598 * 324: clean new branch for ordinal design by @danielinteractive in https://github.com/openpharma/crmPack/pull/641 * 640 convert rnw files to rmd by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/644 * 581 implement tests for samples methodsr by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/585 * clean up by @pengguanya in https://github.com/openpharma/crmPack/pull/642 * 601: fix examine for DADesign by @danielinteractive in https://github.com/openpharma/crmPack/pull/648 * 573 refactoring slot names for sub classes of cohortsize by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/593 * 124 stop rule reporting by @ClaraBeckBayer in https://github.com/openpharma/crmPack/pull/646 * Implementing CrmPackClass class union. by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/653 * Closing #645 by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/660 * 655 stop spc dose report by @ClaraBeckBayer in https://github.com/openpharma/crmPack/pull/658 * 647 clean up dual simulations by @pengguanya in https://github.com/openpharma/crmPack/pull/654 * Publishing concise design document by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/649 * Add grouped single/combo design prototype by @danielinteractive in https://github.com/openpharma/crmPack/pull/662 * 664: Add `DataGrouped` class by @danielinteractive in https://github.com/openpharma/crmPack/pull/665 * Test fixes - adding handling for empty expression `x[i, ]` edge case by @dgkf in https://github.com/openpharma/crmPack/pull/672 * 673: Add `LogisticLogNormalGrouped` class by @danielinteractive in https://github.com/openpharma/crmPack/pull/674 * Implementing the DataOrdinal class by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/667 * Refactor setSeed and getResultList by @0liver0815 in https://github.com/openpharma/crmPack/pull/676 * 675: Add `DesignGrouped` by @danielinteractive in https://github.com/openpharma/crmPack/pull/677 * Fixes first cohort logic for grouped design simulation by @danielinteractive in https://github.com/openpharma/crmPack/pull/684 * Remove references to is.bool and is.scalar by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/686 * Remove plot.gtable and print.gtable by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/697 * 690 remove safeinteger and iswholenumber 1 by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/693 * Remove noOverlap by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/695 * remove %~% by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/689 * 699 remove multiplot by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/700 * New commit for additional statistics by @Prerana17 in https://github.com/openpharma/crmPack/pull/663 * Refactor myBarplot by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/703 * Refactoring matchTolerance by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/706 * 643 h next best tdsamples plot sometimes produces incorrect results by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/710 * 659 add default no argument constructors for remaining classes by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/713 * Fix misspecifications of LogisticLogNormal form by @fenguoerbian in https://github.com/openpharma/crmPack/pull/712 * 587 write a concise design document for the proposed tidy generic 1 by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/714 * Display coverage report and unit test report on site by @cicdguy in https://github.com/openpharma/crmPack/pull/715 * add feature needed to stop mono arm when combo arm stops by @danielinteractive in https://github.com/openpharma/crmPack/pull/701 * Reverting #697 by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/722 * 683 replace/remove is.probability/is.range/is.prob range with applicable additional checkmate assertions by @dimitriskontosBAY in https://github.com/openpharma/crmPack/pull/692 * check that the dose limit is above the minimum of the dose grid, if t… by @dimitriskontosBAY in https://github.com/openpharma/crmPack/pull/725 * 668 implement generic tidy method 1 by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/724 * add @details to explain safetyWindow by @pengguanya in https://github.com/openpharma/crmPack/pull/728 * 731 refactor tests for tidy methods by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/732 * 719: add parallel_start by @danielinteractive in https://github.com/openpharma/crmPack/pull/720 * 707 implement the mcmc prob dose fit methods for the logisticlognormalordinal class by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/735 * 581 implement tests for samples methodsr by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/740 * 698 improve test coverage in design methodsr by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/704 * 736 implement rules methods for ordinal crm models by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/737 * doseFunction and probFunction for LogisticlogNormalOrdinal models by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/745 * 723 remove unnecessary startup message by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/746 * 747 vignette for ordinal crm by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/752 * Adding badges by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/742 * h_this_truth added to helper_design and applied in Design-methods.R by @ClaraBeckBayer in https://github.com/openpharma/crmPack/pull/751 * Ensure LogisticLogNormalOrdinal throws error when cov is not diagonal by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/754 * Add illustration of correlation structure issue to ordinal vignette by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/758 * add doc for trueTmax parameter in simulate method by @pengguanya in https://github.com/openpharma/crmPack/pull/730 * add test for edge case by @pengguanya in https://github.com/openpharma/crmPack/pull/760 * fix version number by @pengguanya in https://github.com/openpharma/crmPack/pull/762 * Fix #759 by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/761 * with suggested changes:stop_report by @Prerana17 in https://github.com/openpharma/crmPack/pull/729 * 739: add `h_simulations_output_format` by @ClaraBeckBayer in https://github.com/openpharma/crmPack/pull/765 * fix .Rproj file by @danielinteractive in https://github.com/openpharma/crmPack/pull/772 * 744 design h determine dlts by @ClaraBeckBayer in https://github.com/openpharma/crmPack/pull/770 * Implement RuleDesignOrdinal and DesignOrdinal classes by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/769 * 767 reporting crmpack objects by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/768 * 771 change from base pipe | to magrittr pipe by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/776 * fix header by @pengguanya in https://github.com/openpharma/crmPack/pull/778 * 779 cleanup simulations summary by @pengguanya in https://github.com/openpharma/crmPack/pull/782 * 775 implement knit print for subclasses of cohortsize including tests by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/784 * Fix #786 by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/787 * 785 implement knit print for subclasses of increments by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/790 * 780 clean dual simulations summary by @pengguanya in https://github.com/openpharma/crmPack/pull/793 * 791 implement knit print for subclasses of data by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/794 * clean up function `getMinInfBeta` and add tests by @danielinteractive in https://github.com/openpharma/crmPack/pull/773 * 781 cleanup pseudo simulations summary by @pengguanya in https://github.com/openpharma/crmPack/pull/800 * 795 implement knit print for Model objects by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/796 * 803 implement knit print for subclasses of stopping by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/805 * Update check.yaml by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/811 * Update tidy method for NextBestNCRMLoss by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/809 * 807 implement knit print for subclasses of nextbest by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/812 * 816 implement knit print methods for subclasses of safetywindow by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/820 * change from roche to openpharma repo by @danielinteractive in https://github.com/openpharma/crmPack/pull/825 * 814 implement knit print for subclasses of design by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/823 * Add @method annotations by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/827 * Use mocks for default constructors with long execution times when unit testing by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/828 * 829 write a knit print vignette 1 by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/830 * 801 cleanup pseudo dual simulations by @pengguanya in https://github.com/openpharma/crmPack/pull/819 * change Daniel's email by @danielinteractive in https://github.com/openpharma/crmPack/pull/838 * Add appropriate indentation when `knit_print()` stopping rule list by @fenguoerbian in https://github.com/openpharma/crmPack/pull/837 * Add link to the knit_print vignette to README by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/840 * First draft of multiple chain discussion document by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/831 * Update URLs by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/848 * Delete redundant cache files by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/849 * 864 convert the knit print vignette to rmd by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/865 * 854 examplepdf vignette typo by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/858 * Allow zero follow-up times in DataDA objects. by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/851 * 852 update to pkgdown in the ci workflow generates new warnings and errors by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/853 * Implement IncrementsMaxToxProb by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/861 * Fix #866 by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/867 * Fix typo in vignette by @Puzzled-Face in https://github.com/openpharma/crmPack/pull/869 * Completes #870 by @PuzzledFace-Astellas in https://github.com/openpharma/crmPack/pull/871 * add new hex sticker in svg format by @danielinteractive in https://github.com/openpharma/crmPack/pull/874 * 833 cleanup pseudo dual flexi simulations by @pengguanya in https://github.com/openpharma/crmPack/pull/834 * temporary suggestion for testing simulate for design class by @robertadamsbayer in https://github.com/openpharma/crmPack/pull/802 * 875: Fast GHA checks by @danielinteractive in https://github.com/openpharma/crmPack/pull/877 * default landing page for pkgdown should be main branch because we don't have releases with it yet by @danielinteractive in https://github.com/openpharma/crmPack/pull/879 * 876: `air` format by @danielinteractive in https://github.com/openpharma/crmPack/pull/880 * 682: Clean up fromQuantiles.R by @danielinteractive in https://github.com/openpharma/crmPack/pull/881 * 680: clean Simulations-class.R by @danielinteractive in https://github.com/openpharma/crmPack/pull/882 * skip vignette builds during check for faster build by @danielinteractive in https://github.com/openpharma/crmPack/pull/883 * 859: Allow combination of ordinal rules by @danielinteractive in https://github.com/openpharma/crmPack/pull/884 * 810: add sim methods tests by @danielinteractive in https://github.com/openpharma/crmPack/pull/885 * 886_more_tests by @danielinteractive in https://github.com/openpharma/crmPack/pull/887 * 888 fix negative surv time by @danielinteractive in https://github.com/openpharma/crmPack/pull/889 * 671: clean `Design-methods.R` by @danielinteractive in https://github.com/openpharma/crmPack/pull/891 * 632: enable TITE CRM simulations in vignette by @danielinteractive in https://github.com/openpharma/crmPack/pull/892 * 748: avoid warning from mcmc on LogisticLogNormalOrdinal by @danielinteractive in https://github.com/openpharma/crmPack/pull/893 * 799: be more precise with doc by @danielinteractive in https://github.com/openpharma/crmPack/pull/894 * 193: Use `Rdpack` for references by @danielinteractive in https://github.com/openpharma/crmPack/pull/898 * 895: clean `helpers.R` by @danielinteractive in https://github.com/openpharma/crmPack/pull/899 * 896: clean up `mcmc.R` by @danielinteractive in https://github.com/openpharma/crmPack/pull/900 * 681: clean up `Simulations-methods.R` by @danielinteractive in https://github.com/openpharma/crmPack/pull/901 * 897: clean up `Rules-methods.R` by @danielinteractive in https://github.com/openpharma/crmPack/pull/902 * 903: `NextBestEWOC`, doc for adaptive weights in TITE CRM by @danielinteractive in https://github.com/openpharma/crmPack/pull/905 * 906: more tests by @danielinteractive in https://github.com/openpharma/crmPack/pull/907 * 904: clean up by @danielinteractive in https://github.com/openpharma/crmPack/pull/908 * CRAN release 2.0 by @danielinteractive in https://github.com/openpharma/crmPack/pull/910 * 912: fix `LogisticNormalFixedMixture` validation by @danielinteractive in https://github.com/openpharma/crmPack/pull/913 * 915: reduce two example files below 5 seconds threshold on CRAN checks by @danielinteractive in https://github.com/openpharma/crmPack/pull/916 ## New Contributors * @TJaki made their first contribution in https://github.com/openpharma/crmPack/pull/3 * @cicdguy made their first contribution in https://github.com/openpharma/crmPack/pull/13 * @danielinteractive made their first contribution in https://github.com/openpharma/crmPack/pull/12 * @wwojciech made their first contribution in https://github.com/openpharma/crmPack/pull/14 * @DimKon5 made their first contribution in https://github.com/openpharma/crmPack/pull/102 * @pc494 made their first contribution in https://github.com/openpharma/crmPack/pull/158 * @gunhanb made their first contribution in https://github.com/openpharma/crmPack/pull/257 * @reikoch made their first contribution in https://github.com/openpharma/crmPack/pull/339 * @marlenesg made their first contribution in https://github.com/openpharma/crmPack/pull/424 * @PuzzledFace made their first contribution in https://github.com/openpharma/crmPack/pull/374 * @dgkf made their first contribution in https://github.com/openpharma/crmPack/pull/548 * @dimitriskontosBAY made their first contribution in https://github.com/openpharma/crmPack/pull/556 * @pengguanya made their first contribution in https://github.com/openpharma/crmPack/pull/574 * @ClaraBeckBayer made their first contribution in https://github.com/openpharma/crmPack/pull/646 * @Prerana17 made their first contribution in https://github.com/openpharma/crmPack/pull/663 * @fenguoerbian made their first contribution in https://github.com/openpharma/crmPack/pull/712 * @PuzzledFace-Astellas made their first contribution in https://github.com/openpharma/crmPack/pull/871 * @robertadamsbayer made their first contribution in https://github.com/openpharma/crmPack/pull/802 **Full Changelog**: https://github.com/openpharma/crmPack/commits/v2.0.1