NET-Seq data analysis

PINTS tasks stall when FASTA includes GL/KI contigs; works after restricting to chr

Generate comprehensive HTML QC reports with interactive plots

Implement eNRSA algorithmic optimizations for speed and memory

Integrate seqOutBias for enzymatic bias correction

Comprehensive documentation update for enhanced pipeline features

Plan integration roadmap for nascent RNA pipeline enhancements

🚀 EPIC: Comprehensive nascent RNA pipeline enhancements

Implement RNA degradation ratio calculation

Add serial alignment preprocessing for contamination removal