## What's Changed * bump version to 1.2.0dev by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/25 * AWS full test manual dispatch by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/26 * Update spades resources and usage instructions by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/27 * Important! Template update for nf-core/tools v3.1.0 by @nf-core-bot in https://github.com/nf-core/denovotranscript/pull/28 * Important! Template update for nf-core/tools v3.1.1 by @mirpedrol in https://github.com/nf-core/denovotranscript/pull/29 * Fix ch_transcripts and ch_pubids for AWS by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/30 * Fix transrate dependencies issue by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/32 * Bump to version 1.2.0 by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/33 * Important! Template update for nf-core/tools v3.2.0 by @nf-core-bot in https://github.com/nf-core/denovotranscript/pull/36 * Release version 1.2.0 by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/34 ## New Contributors * @mirpedrol made their first contribution in https://github.com/nf-core/denovotranscript/pull/29 **Full Changelog**: https://github.com/nf-core/denovotranscript/compare/1.1.0...1.2.0

## What's Changed * Post-release DOI and changelog update by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/10 * Post-release DOI and chagelog update by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/11 * Important! Template update for nf-core/tools v3.0.2 by @nf-core-bot in https://github.com/nf-core/denovotranscript/pull/14 * Fix skip_assembly by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/15 * Increase trinity resources by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/16 * bump pipeline version to 1.1.0 by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/17 * Fix Salmon quantification for skip_assembly mode by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/21 * Update Trinity module and fix dependency issue by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/24 * Release version 1.1.0 by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/18 ## New Contributors * @nf-core-bot made their first contribution in https://github.com/nf-core/denovotranscript/pull/14 **Full Changelog**: https://github.com/nf-core/denovotranscript/compare/1.0.0...1.1.0

# [[1.0.0](https://github.com/nf-core/denovotranscript/releases/tag/1.0.0)] - 2024-08-15 Initial release of nf-core/denovotranscript, a pipeline for _de novo_ transcriptome assembly of paired-end short reads from bulk RNA-seq. ## Contributors @avani-bhojwani, @timslittle