## Maintenance * Update Github CI by @daico007 in https://github.com/mosdef-hub/foyer/pull/539 * Do not use deprecated OpenFF Toolkit iterator by @mattwthompson in https://github.com/mosdef-hub/foyer/pull/541 * [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #542, #544 - #548, #552 - #554 * Fix failing CI tests on main by @daico007 in https://github.com/mosdef-hub/foyer/pull/551 **Full Changelog**: https://github.com/mosdef-hub/foyer/compare/0.12.0...0.12.1

## Features * Update nbfix to use parmed structure.copy by @jaclark5 in https://github.com/mosdef-hub/foyer/pull/530 * Add note explaining the origin of the name "foyer" by @ctk3b in https://github.com/mosdef-hub/foyer/pull/532 * change default of use_residue_map to be False by @daico007 in https://github.com/mosdef-hub/foyer/pull/535 ## Bug Fixes * Update how xml_writer derive scaling factors by @daico007 in https://github.com/mosdef-hub/foyer/pull/518 ## Maintenance * [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #519, #521, #524, #525, #526, #527, #528, #534 * chore: fix typos by @e-kwsm in https://github.com/mosdef-hub/foyer/pull/522 * Add CodeQL workflow for GitHub code scanning by @lgtm-com in https://github.com/mosdef-hub/foyer/pull/520 * Turn off fail-fast by @daico007 in https://github.com/mosdef-hub/foyer/pull/523 * Attempting to fix failing CI by @daico007 in https://github.com/mosdef-hub/foyer/pull/533 * Remove obsolete requirement files by @daico007 in https://github.com/mosdef-hub/foyer/pull/537 * Add testing for py3.10 by @daico007 in https://github.com/mosdef-hub/foyer/pull/536 ## New Contributors * @lgtm-com made their first contribution in https://github.com/mosdef-hub/foyer/pull/520 * @jaclark5 made their first contribution in https://github.com/mosdef-hub/foyer/pull/530 **Full Changelog**: https://github.com/mosdef-hub/foyer/compare/0.11.3...0.12