[Code scan] Truncate rewritten training JSON after HDF5 conversion

[Code scan] Move Ruff lint settings out of deprecated top-level keys

Clarification needed: 'Simplify' Transfer Learning vs. 'DP-Gen Run' Finetuning for potential model updates

[BUG] Un-necessary assertion ntypes < len(pps) when making siesta input files

Remove `model_devi_e_trust_lo` and `model_devi_e_trust_hi` from `dpgen run` examples

Please help - dpgen not working

Improve document on `fp_skip_bad_box`

[Feature Request] Move .github/copilot-instructions.md to AGENTS.md

[Feature Request] Filtering unreasonable structures before 02.fp in dpgen1

[Feature Request] Set up Copilot instructions