### Added - We added the ability to remove XMP metadata from linked files. [#8277](https://github.com/JabRef/jabref/issues/8277) - Improved merge dialog decisions for the `month` field by using a new plausibility comparator. JabRef now prefers normalized months (e.g., `#jun#`) or integers over unnormalized strings. [#14457](https://github.com/JabRef/jabref/issues/14457) - We added web search capability to ScienceDirect using the [Scopus](https://www.scopus.com/) Search API, enabling users to search for academic literature directly from JabRef. [#14421](https://github.com/JabRef/jabref/issues/14421) - We fixed an issue where a redundant validation listener was causing duplicate error dialogs when invalid BibTeX source was detected in the SourceTab. [#14805](https://github.com/JabRef/jabref/issues/14805) - We added support for selecting citation fetchers in the Citations tab. [#14430](https://github.com/JabRef/jabref/issues/14430) - In the "New Entry" dialog the identifier type is now automatically updated on typing. [#14660](https://github.com/JabRef/jabref/issues/14660) - Consistency check is now aware of custom entry types, custom fields, and reports missing required fields. [#14257](https://github.com/JabRef/jabref/pull/14257) - We added support for [OpenCitations](https://opencitations.net/) and [OpenAlex](https://docs.openalex.org/) both in the GUI (tab "Citations") and JabKit (`--get-cited-works`, `--get-citing-works`). [#14996](https://github.com/JabRef/jabref/pull/14996) - We added the ability to copy selected text from AI chat interface. [#14655](https://github.com/JabRef/jabref/issues/14655) - We added cover images for books, which will display in entry previews if available, and can be automatically downloaded when adding an entry via ISBN. [#10120](https://github.com/JabRef/jabref/issues/10120) - We added API key configuration support for [OpenAlex](https://openalex.org/). [#15023](https://github.com/JabRef/jabref/pull/15023) - We added a warning if the citation command does not contain the expected placeholders. [#15063](https://github.com/JabRef/jabref/pull/15063) - We added API key configuration support for SemanticScholar. [#15023](https://github.com/JabRef/jabref/pull/15023) - REST-API: Added more commands (`selectentries`, `open`, `focus`). [#14855](https://github.com/JabRef/jabref/pull/14855) - REST-API: Added the possibility to trigger the import dialog. [#14855](https://github.com/JabRef/jabref/pull/14855) - REST-API: Allow import of supported formats via `POST http://localhost:23119/libraries/current/entries`. [#14896](https://github.com/JabRef/jabref/pull/14896) - We added the option to enable/disable the HTTP-Server for the browser extension to the Quick Settings on the Welcome screen [#14902](https://github.com/JabRef/jabref/issues/14902) - We added the ability to update bibliographic information based on the existing entry data. [#14185](https://github.com/JabRef/jabref/issues/14185) - We added an option to clear [groups with explicitly selected entries](https://docs.jabref.org/finding-sorting-and-cleaning-entries/groups#explicit-selection). [#15001](https://github.com/JabRef/jabref/issues/15001) - We added an option to open the citation fetcher API URL in the browser in the Citations tab. [#15033](https://github.com/JabRef/jabref/issues/15033) - We added the option to group entries by entry type [#15040](https://github.com/JabRef/jabref/issues/15040) - We added "DOI" and "URL" fields to the default customized preview style [#14193](https://github.com/JabRef/jabref/issues/14193) - We added a progress indicator for the cleanup operation. [#15122](https://github.com/JabRef/jabref/issues/15122) ### Changed - Refined the Automatic Field Editor to contextually filter field lists based on populated data in selected entries. [#15066](https://github.com/JabRef/jabref/issues/15066) - We moved journal abbreviations from the "Quality" menu to the "Clean up entries" dialog. [#11791](https://github.com/JabRef/jabref/issues/11791) - Checking for existence of the "Imported entries" group is now case-insensitive. [#14999](https://github.com/JabRef/jabref/pull/14999) - Batch update for bibliographic information now uses heuristics to update the field. - REST-API: Command resource: `command` instead of `commandId`. [#14855](https://github.com/JabRef/jabref/pull/14855) - macOS distributions now take "intel" and "silicon" as suffixes. [#14057](https://github.com/JabRef/jabref/pull/14057) - Moved "Rename subgroup" below "Edit group" and renamed it to "Rename group". [#15041](https://github.com/JabRef/jabref/issues/15041) - We hanged the bibliographic information update process to show a notification instead of a blocking dialog in case of errors. [#15097](https://github.com/JabRef/jabref/issues/15097) ### Fixed - We fixed an issue where empty entry type or entry type with spaces can be created. [#15103](https://github.com/JabRef/jabref/issues/15103) - We fixed an issue where duplicate entry type can be created and overwrite existing entry type. [#15074](https://github.com/JabRef/jabref/issues/15074) - We fixed an issue regarding enabledment of buttons in identifier fields (DOI, Eprint, ISBN). [#14821](https://github.com/JabRef/jabref/issues/14821) - Fixed localized walkthrough highlight for 'Preferences' menu item. [#14822](https://github.com/JabRef/jabref/issues/14822) - We Improved detection of arXiv identifiers when pasting arXiv URLs that include URL fragments. [#14659](https://github.com/JabRef/jabref/issues/14659) - We fixed an issue where exporting group chat to JSON resulted in empty entries array. [#14647](https://github.com/JabRef/jabref/issues/14647) - We fixed an error on startup when using portable preferences. [#14729](https://github.com/JabRef/jabref/issues/14729) - We fixed an issue when warning for duplicate entries in the "New Entry" dialog. [#14662](https://github.com/JabRef/jabref/pull/14662) - We fixed the Quality > Automatically set file links button. Now if a file is moved, the button can relink the moved file to the broken linked file. [#9798](https://github.com/JabRef/jabref/issues/9798) - We fixed an issue where bulk import operations polluted the navigation history, making the Back/Forward buttons navigate through imported entries instead of only user-selected entries. [#13878](https://github.com/JabRef/jabref/issues/13878) - We fixed an issue where JabRef would not start on Linux ARM due to missing binaries for postgres-embedded [#14783](https://github.com/JabRef/jabref/issues/14783) - We fixed an issue when importing an entry to a library without groups, but group "Imported Entries" was automatically created. - We fixed an issue where journal abbreviations chose the wrong abbreviation when fuzzy matching. [#14850](https://github.com/JabRef/jabref/pull/14850) - We fixed an issue where JaRef would not correctly remember the opened side panels in the preferences [#14818](https://github.com/JabRef/jabref/issues/14818) - We fixed an issue fetching DOI information when DOIs included URL-invalid characters (e.g., `10.1002/1098-108x(198905)8:3<343::aid-eat2260080310>3.0.co;2-c`). [#14996](https://github.com/JabRef/jabref/pull/14996) - We fixed an issue of OpenAlexFetcher not including the DOI. [#15023](https://github.com/JabRef/jabref/pull/15023) - We fixed an issue displaying a fetcher error in the citations tab. [#15023](https://github.com/JabRef/jabref/pull/15023) - Updates of the pre-selected fetchers are now followed at the Web fetchers. [#14768](https://github.com/JabRef/jabref/pull/14768) - Restart search button in citation-relation panel now refreshes using external services. [#14757](https://github.com/JabRef/jabref/issues/14757) - Group selection now depends only on the user selection. [#14084](https://github.com/JabRef/jabref/issues/14084) - Fixed groups sidebar not refreshing after importing a library. [#13684](https://github.com/JabRef/jabref/issues/13684) - Improved tooltip responsiveness and removed empty space in entry preview. [#12351](https://github.com/JabRef/jabref/issues/12351) - We fixed an issue where the "Imported entries" group was automatically selected when switching between library tabs. [#14948](https://github.com/JabRef/jabref/issues/14948) - Endashes and emdashes are now supported in citation keys for the LibreOffice CSL integration. [#14961](https://github.com/JabRef/jabref/issues/14961) - We fixed an issue where JabRef would throw an `IllegalCharacterException` trying to download pdfs using links containing a colon (`:`). [#14975](https://github.com/JabRef/jabref/issues/14975) - `--help` works now at JabSrv. [#15085](https://github.com/JabRef/jabref/pull/15085) - Fixed UI overlap in Citation Relations tab when entry titles are very long. [#15047](https://github.com/JabRef/jabref/issues/15047) - Fixed capitalization errors in the Automatic Field Editor. [#15068](https://github.com/JabRef/jabref/issues/15068) ### Removed - We removed keyboard shortcuts for toggling journal abbreviation (<kbd>Ctrl</kbd>+<kbd>Alt</kbd>+<kbd>A</kbd>). [#14850](https://github.com/JabRef/jabref/pull/14850)

### Added - We added an initial [cite as you write](https://retorque.re/zotero-better-bibtex/citing/cayw/) ("CAYW") endpoint. [#13187](https://github.com/JabRef/jabref/issues/13187) - We added a field for the latest ICORE conference ranking lookup on the General Tab. [#13476](https://github.com/JabRef/jabref/issues/13476) - We added the option to enable the language server in the preferences. [#13697](https://github.com/JabRef/jabref/pull/13697) - We introduced an option in Preferences under (under Linked files -> Linked file name conventions) to automatically rename linked files when an entry data changes. [#11316](https://github.com/JabRef/jabref/issues/11316) - We added tooltips (on hover) for 'Library-specific file directory', 'User-specific file directory' and 'LaTeX file directory' fields of the library properties window. [#12269](https://github.com/JabRef/jabref/issues/12269) - We added the option to configure 'Add space after citation' in Libre/OpenOffice panel settings. [#13559](https://github.com/JabRef/jabref/issues/13559) - We added automatic lookup of DOI at citation information. [#13561](https://github.com/JabRef/jabref/issues/13561) - We added a field for the citation count field on the General tab. [#13477](https://github.com/JabRef/jabref/issues/13477) - We added automatic lookup of DOI at citation relations [#13234](https://github.com/JabRef/jabref/issues/13234) - We added focus on the field Link in the "Add file link" dialog. [#13486](https://github.com/JabRef/jabref/issues/13486) - We introduced a settings parameter to manage citations' relations local storage time-to-live with a default value set to 30 days. [#11189](https://github.com/JabRef/jabref/issues/11189) - We distribute arm64 images for Linux. [#10842](https://github.com/JabRef/jabref/issues/10842) - When adding an entry to a library, a warning is displayed if said entry already exists in an active library. [#13261](https://github.com/JabRef/jabref/issues/13261) - We added the field `monthfiled` to the default list of fields to resolve BibTeX-Strings for [#13375](https://github.com/JabRef/jabref/issues/13375) - We added a new ID based fetcher for [EuropePMC](https://europepmc.org/). [#13389](https://github.com/JabRef/jabref/pull/13389) - We added quick settings for welcome tab. [#12664](https://github.com/JabRef/jabref/issues/12664) - We added pagination support for the web search entries dialog, improving navigation for large search results. [#5507](https://github.com/JabRef/jabref/issues/5507) - We added "copy preview as markdown" feature. [#12552](https://github.com/JabRef/jabref/issues/12552) - In case no citation relation information can be fetched, we show the data providers reason. [#13549](https://github.com/JabRef/jabref/pull/13549) - When relativizing file names, symlinks are now taken into account. [#12995](https://github.com/JabRef/jabref/issues/12995) - We added a new button for shortening the DOI near the DOI field in the general tab when viewing an entry. [#13639](https://github.com/JabRef/jabref/issues/13639) - We added support for finding CSL-Styles based on their short title (e.g. apa instead of "american psychological association"). [#13728](https://github.com/JabRef/jabref/pull/13728) - We added BibLaTeX datamodel validation support in order to improve error message quality in entries' fields validation. [#13318](https://github.com/JabRef/jabref/issues/13318) - We added chronological navigation for entries in each library. [#6352](https://github.com/JabRef/jabref/issues/6352) - We added support for using Medline/Pubmed fetcher with an API key. [#11296](https://github.com/JabRef/jabref/issues/11296#issuecomment-3289005011) - We added support for using OpenAlex fetcher. [#13940](https://github.com/JabRef/jabref/issues/13940) - We added [LOBID](https://lobid.org/) as an alternative ISBN-Fetcher. [#13076](https://github.com/JabRef/jabref/issues/13076) - We added an option to choose the group during import of the entry(s). [#9191](https://github.com/JabRef/jabref/issues/9191) - We added an option to search and filter the fields and formatters in the clean up entries dialog. [#13890](https://github.com/JabRef/jabref/issues/13890) - We added support for managing multiple linked files via the entry context menu. [#12567](https://github.com/JabRef/jabref/issues/12567) - We made the "Configure API key" option in the Web Search preferences tab searchable via preferences search. [#13929](https://github.com/JabRef/jabref/issues/13929) - We added support for Cygwin-file paths on a Windows Operating System. [#13274](https://github.com/JabRef/jabref/issues/13274) - We added a success dialog when using the "Copy to" option, indicating whether the entry was successfully copied and specifying if a cross-reference entry was included. [#12486](https://github.com/JabRef/jabref/issues/12486) - We added a new button to toggle the file path between an absolute and relative formats in context of library properties. [#13031](https://github.com/JabRef/jabref/issues/13031) - We added automatic selection of the “Enter Identifier” tab with pre-filled clipboard content if the clipboard contains a valid identifier when opening the “Create New Entry” dialog. [#13087](https://github.com/JabRef/jabref/issues/13087) - We added batch fetching of bibliographic data for multiple entries in the "Lookup" menu. [#12275](https://github.com/JabRef/jabref/issues/12275) - We added an "Open example library" button to Welcome Tab. [#13014](https://github.com/JabRef/jabref/issues/13014) - We added automatic detection and selection of the identifier type (e.g., DOI, ISBN, arXiv) based on clipboard content when opening the "New Entry" dialog [#13111](https://github.com/JabRef/jabref/pull/13111) - We added support for import of a Refer/BibIX file format. [#13069](https://github.com/JabRef/jabref/issues/13069) - We added markdown rendering and copy capabilities to AI chat responses. [#12234](https://github.com/JabRef/jabref/issues/12234) - We introduced a user-configurable group 'Imported entries' for automatic import of entries from web search, PDF import and web fetchers. [#12548](https://github.com/JabRef/jabref/issues/12548) - We added a tooltip to keywords that resemble Math Subject Classification (MSC) codes. [#12944](https://github.com/JabRef/jabref/issues/12944) - We added a formatter to convert keywords that resemble MSC codes to their descriptions. [#12944](https://github.com/JabRef/jabref/issues/12944) - We added support for multi-file import across different formats. [#13269](https://github.com/JabRef/jabref/issues/13269) - We added support for dark title bar on Windows. [#11457](https://github.com/JabRef/jabref/issues/11457) - We added functionality to focus running instance when trying to start a second instance. [#13129](https://github.com/JabRef/jabref/issues/13129) - We added a "Copy Field Content" submenu to the entry context menu, allowing users to quickly copy specific field contents including Author, Journal, Date, Keywords, and Abstract fields from selected entries. [#13280](https://github.com/JabRef/jabref/pull/13280) - We added a highlighted diff regarding changes to the Group Tree Structure of a bib file, made outside JabRef. [#11221](https://github.com/JabRef/jabref/issues/11221) - We added a new setting in the 'Entry Editor' preferences to hide the 'File Annotations' tab when no annotations are available. [#13143](https://github.com/JabRef/jabref/issues/13143) - We added a new "Add JabRef suggested groups" option in the context menu of "All entries". [#12659](https://github.com/JabRef/jabref/issues/12659) - We added an option to create entries directly from Bib(La)TeX sources to the 'Create New Entry' tool. [#8808](https://github.com/JabRef/jabref/issues/8808) - We added the provision to choose different CSL bibliography body formats (e.g. First Line Indent, Hanging Indent, Bibliography 1, etc.) in the LibreOffice integration. [#13049](https://github.com/JabRef/jabref/issues/13049) - We introduced walkthrough functionality [#12664](https://github.com/JabRef/jabref/issues/12664) - The Welcome Tab now has a responsive layout. [#12664](https://github.com/JabRef/jabref/issues/12664) - We introduced a donation prompt in the Welcome tab. [#12664](https://github.com/JabRef/jabref/issues/12664) - We introduced a new command line application called `jabkit`. [#13012](https://github.com/JabRef/jabref/pull/13012) [#110](https://github.com/JabRef/jabref/issues/110) - We added a new `jabkit` command `pseudonymize` to pseudonymize the library. [#13109](https://github.com/JabRef/jabref/issues/13109) - We added the integrity check to the jabkit cli application. [#13848](https://github.com/JabRef/jabref/issues/13848) - We added "Bibliography Heading" to the available CSL bibliography header formats in the LibreOffice integration. [#13049](https://github.com/JabRef/jabref/issues/13049) ### Changed - We merged the 'New Entry', 'Import by ID', and 'New Entry from Plain Text' tools into a single 'Create New Entry' tool. [#8808](https://github.com/JabRef/jabref/issues/8808) - We moved all sorting options into a dedicated “Sort” sub-menu in the Groups menu. ([#14017](https://github.com/JabRef/jabref/issues/14017)) - We merged `Citation information` and `Citation relations` into a singular tab. [#13618](https://github.com/JabRef/jabref/issues/13618) - We changed `ISSNCleanup` into `NormalizeIssn` a `ISSN` formatter. [#13748](https://github.com/JabRef/jabref/issues/13748) - We changed Citation Relations tab and gave tab panes more descriptive titles and tooltips. [#13619](https://github.com/JabRef/jabref/issues/13619) - We changed the name from Open AI Provider to Open AI (or API compatible). [#13585](https://github.com/JabRef/jabref/issues/13585) - We use `https` to connect to [shortDOI](https://shortdoi.org/) service. [#13637](https://github.com/JabRef/jabref/pull/13637) - We moved the clear fields mechanic in the Automatic Field Editor from the edit content tab to a separate tab. [#13780](https://github.com/JabRef/jabref/issues/13780) - We improved the detection of DOIs on the first page of a PDF. [#13487](https://github.com/JabRef/jabref/pull/13487) - We moved some functionality from the graphical application `jabref` with new command verbs `generate-citation-keys`, `check-consistency`, `fetch`, `search`, `convert`, `generate-bib-from-aux`, `preferences` and `pdf` to the new toolkit. [#13012](https://github.com/JabRef/jabref/pull/13012) [#110](https://github.com/JabRef/jabref/issues/110) - We renamed the "Body Text" CSL bibliography header format name to "Text body" as per internal LibreOffice conventions. [#13074](https://github.com/JabRef/jabref/pull/13074) - We moved the "Modify bibliography title" option from the CSL styles tab of the Select Style dialog to the OpenOffice/LibreOffice side panel and renamed it to "Bibliography properties". [#13074](https://github.com/JabRef/jabref/pull/13074) - We changed path output display to show the relative path with respect to library path in context of library properties. [#13031](https://github.com/JabRef/jabref/issues/13031) - We improved JabRef's internal document viewer. It now allows text section, searching and highlighting of search terms and page rotation [#13193](https://github.com/JabRef/jabref/pull/13193). - When importing a PDF, there is no empty entry column shown in the multi merge dialog. [#13132](https://github.com/JabRef/jabref/issues/13132) - We added a progress dialog to the "Check consistency" action and progress output to the corresponding cli command. [#12487](https://github.com/JabRef/jabref/issues/12487) - The BibTeX source is now formatted using the JabRef style at the import inspection dialog. [#13015](https://github.com/JabRef/jabref/issues/13015) - We made the `check-consistency` command of the toolkit always return an exit code; 0 means no issues found, a non-zero exit code reflects any issues, which allows CI to fail in these cases [#13328](https://github.com/JabRef/jabref/issues/13328). - We changed the validation error dialog for overriding the default file directories to a confirmation dialog for saving other preferences under the library properties. [#13488](https://github.com/JabRef/jabref/pull/13488) - We made the copy sub menu on the context menu consistent with the copy sub menu at "Edit". [#13280](https://github.com/JabRef/jabref/pull/13280) - We improved file exists warning dialog with clearer options and tooltips [#12565](https://github.com/JabRef/jabref/issues/12565) - We changed the syntax for the web search to the one of the main search bar. [#13607](https://github.com/JabRef/jabref/issues/13607) - We improved nested scrolling for the web search tab in the preferences dialog [#13791](https://github.com/JabRef/jabref/pull/13791) - We improved the event viewer for debugging [#13783](https://github.com/JabRef/jabref/pull/13783). - We improved "REDACTED" replacement of API key value in web fetcher search URL [#13796](https://github.com/JabRef/jabref/issues/13796) - When the pin "Keep dialog always on top" in the global search dialog is selected, the search window stays open when double-clicking on an entry. [#13840](https://github.com/JabRef/jabref/issues/13840) - We improved the UI of regex replacement in the citation key generator tab. [#13939](https://github.com/JabRef/jabref/pull/13939) - We improved the way we check for matching curly braces in BibTeX fields and made error messages easier to understand. [#12605](https://github.com/JabRef/jabref/issues/12605) - We improved the citations relations caching by implementing an offline storage. [#11189](https://github.com/JabRef/jabref/issues/11189) - A space is now added by default after citations inserted via the Libre/OpenOffice integration. [#13559](https://github.com/JabRef/jabref/issues/13559) ### Fixed - We fixed an issue where search results would show stale entries after deleting entries from search results. [#13984](https://github.com/JabRef/jabref/issues/13984) - When filename pattern is missing for linked files, pattern handling has been introduced to avoid suggesting meaningless filenames like "-". [#13735](https://github.com/JabRef/jabref/issues/13735) - We fixed an issue where "Print preview" would throw a `NullPointerException` if no printers were available. [#13708](https://github.com/JabRef/jabref/issues/13708) - We fixed an issue where "Specify Bib(La)TeX" tab was not focused when Bib(La)TeX was in the clipboard. [#13597](https://github.com/JabRef/jabref/issues/13597) - We fixed an issue whereby the 'About' dialog was not honouring the user's configured font preferences. [#13558](https://github.com/JabRef/jabref/issues/13558) - We fixed an issue where the Pagetotal column was sorting the values alphabetically instead of numerically. [#12533](https://github.com/JabRef/jabref/issues/12533) - We fixed an issue where URLs starting with "www." (without a protocol) in file fields caused an `IllegalArgumentException: URI is not absolute` error. [#12186](https://github.com/JabRef/jabref/issues/12186) - We fixed the dark mode of the BibTeX Source dialog in the Citation Relations tab. [#13599](https://github.com/JabRef/jabref/issues/13599) - We fixed an issue where the LibreOffice integration did not support citation keys containing Unicode characters. [#13301](https://github.com/JabRef/jabref/issues/13301) - We fixed an issue where the "Search ShortScience" action did not convert LaTeX-formatted titles to Unicode. [#13418](https://github.com/JabRef/jabref/issues/13418) - We fixed an issue where LaTeX file directories were not properly shared between different users on the same host. [#9990](https://github.com/JabRef/jabref/issues/9990) - We added a fallback for the "Convert to biblatex" cleanup when it failed to populate the `date` field if `year` contained a full date in ISO format (e.g., `2011-11-11`). [#11868](https://github.com/JabRef/jabref/issues/11868) - We fixed an issue where directory check for relative path was not handled properly under library properties. [#13017](https://github.com/JabRef/jabref/issues/13017) - We fixed an exception on tab dragging. [#12921](https://github.com/JabRef/jabref/issues/12921) - We fixed an issue where the option for which method to use when parsing plaintext citations was unavailable in the 'Create New Entry' tool. [#8808](https://github.com/JabRef/jabref/issues/8808) - We fixed an issue where the "Make/Sync bibliography" button in the OpenOffice/LibreOffice sidebar was not enabled when a jstyle was selected. [#13055](https://github.com/JabRef/jabref/pull/13055) - We fixed an issue where CSL bibliography title properties would be saved even if the "Modify bibliography title" dialog was closed without pressing the "OK" button. [#13074](https://github.com/JabRef/jabref/pull/13074) - We added "Hanging Indent" as the default selected bibliography body format for CSL styles that specify it (e.g. APA). [#13074](https://github.com/JabRef/jabref/pull/13074) - We fixed an issue where bibliography entries generated from CSL styles had leading spaces. [#13074](https://github.com/JabRef/jabref/pull/13074) - We fixed an issue where the preview area in the "Select Style" dialog of the LibreOffice integration was too small to display full content. [#13051](https://github.com/JabRef/jabref/issues/13051) - We excluded specific fields (e.g., `comment`, `pdf`, `sortkey`) from the consistency check to reduce false positives [#13131](https://github.com/JabRef/jabref/issues/13131) - We fixed an issue where moved or renamed linked files in the file directory were not automatically relinked by the “search for unlinked files” feature. [#13264](https://github.com/JabRef/jabref/issues/13264) - We fixed an issue with proxy setup in the absence of a password. [#12412](https://github.com/JabRef/jabref/issues/12412) - We fixed an issue with the targets of the menu item "copy to". [#13741](https://github.com/JabRef/jabref/pull/13741) - We fixed an issue where the tab showing the fulltext search results was not displayed. [#12865](https://github.com/JabRef/jabref/issues/12865) - We fixed an issue showing an empty tooltip in maintable. [#11681](https://github.com/JabRef/jabref/issues/11681) - We fixed an issue displaying a warning if a file to open is not found. [#13430](https://github.com/JabRef/jabref/pull/13430) - We fixed an issue where Document Viewer showed technical exceptions when opening entries with non-PDF files. [#13198](https://github.com/JabRef/jabref/issues/13198) - We fixed an issue with double display of the library filename in the tab tooltip in the case of a changed library. [#13781](https://github.com/JabRef/jabref/pull/13781) - When creating a library, if you drag a PDF file containing only a single column, the dialog will now automatically close. [#13262](https://github.com/JabRef/jabref/issues/13262) - We fixed an issue where the tab showing the fulltext search results would appear blank after switching libraries. [#13241](https://github.com/JabRef/jabref/issues/13241) - We fixed an issue where field names were inconsistently capitalized. [#10590](https://github.com/JabRef/jabref/issues/10590) - We fixed an issue where "Copy to" was enabled even if no other library was opened. [#13280](https://github.com/JabRef/jabref/pull/13280) - We fixed an issue where the groups were still displayed after closing all libraries. [#13382](https://github.com/JabRef/jabref/issues/13382) - Enhanced field selection logic in the Merge Entries dialog when fetching from DOI to prefer valid years and entry types. [#12549](https://github.com/JabRef/jabref/issues/12549) - We fixed an issue where the "Check Consistency" dialog is unresponsive. [#13700](https://github.com/JabRef/jabref/issues/13700) - We fixed an issue where opening the Three Way Merge dialog would throw an exception when year field contains an invalid year value. [#13673](https://github.com/JabRef/jabref/issues/13673) - We improved consistency in the Add Buttons. [#13791](https://github.com/JabRef/jabref/pull/13791) - We fixed an issue where theme or font size are not respected for all dialogs [#13558](https://github.com/JabRef/jabref/issues/13558) - We removed unnecessary spacing and margin in the AutomaticFieldEditor. [#13792](https://github.com/JabRef/jabref/pull/13792) - We fixed an issue where global search auto-completion only worked after switching tabs. [#11428](https://github.com/JabRef/jabref/issues/11428) - We fixed an issue where hierarchical keywords would only show the parent keyword in the entry editor. [#11390](https://github.com/JabRef/jabref/issues/11390) - We fixed an issue where some file choosers regarding LaTeX-aux files did not open in the directory of the last selected file. [#13861](https://github.com/JabRef/jabref/pull/13861) - We fixed an issue where the LaTeX file directory was not stored correctly in combination with the usage of groups from aux files. [#8344](https://github.com/JabRef/jabref/issues/8344) - We prevented a brief flash of the default JavaFX (Modena) theme on startup. [#13877](https://github.com/JabRef/jabref/pull/13877) - We fixed an issue where button-bar buttons truncated long text with ellipsis. [#13877](https://github.com/JabRef/jabref/pull/13877) - We fixed an issue where ignoring of subdirectories via `.gitingore` patterns did not work in the "Find unlinked files dialog". [forum#5425](https://discourse.jabref.org/t/set-list-of-ignored-folders-paths/5425/6) - We fixed an issue where CTRL+W does not close the current tab [#12530](https://github.com/JabRef/jabref/issues/12530) - We fixed an issue where the "Applications to push entries to" list in the preferences was not sorted alphabetically. [#14058](https://github.com/JabRef/jabref/issues/14058) - We fixed an issue where notice text in AI chat was not automatically refreshed when the user changed preferences.[#13855](https://github.com/JabRef/jabref/issues/13855) - We fixed an issue where the user could add custom entry types with spaces in their names. [#14088](https://github.com/JabRef/jabref/issues/14088) - We fixed various issues that triggered `IndexOutOfBoundsException`s, when editing entries. [#8012](https://github.com/JabRef/jabref/issues/8012), [#8826](https://github.com/JabRef/jabref/issues/8826), [#8217](https://github.com/JabRef/jabref/issues/8217), [#8281](https://github.com/JabRef/jabref/issues/8281) ### Removed - We removed the ability to change internal preference values. [#13012](https://github.com/JabRef/jabref/pull/13012) - We removed support for MySQL/MariaDB and Oracle. [#12990](https://github.com/JabRef/jabref/pull/12990) - We removed library migrations (users need to use JabRef 6.0-alpha.1 to perform migrations) [#12990](https://github.com/JabRef/jabref/pull/12990)

### Added - We added a button in Privacy notice and Mr. DLib Privacy settings notice for hiding related tabs. [#11707](https://github.com/JabRef/jabref/issues/11707) - We added buttons "Add example entry" and "Import existing PDFs" when a library is empty, making it easier for new users to get started. [#12662](https://github.com/JabRef/jabref/issues/12662) - In the Open/LibreOffice integration, we added the provision to modify the bibliography title and its format for CSL styles, in the "Select style" dialog. [#12663](https://github.com/JabRef/jabref/issues/12663) - We added a new Welcome tab which shows a welcome screen if no database is open. [#12272](https://github.com/JabRef/jabref/issues/12272) - We added <kbd>F5</kbd> as a shortcut key for fetching data and <kbd>Alt+F</kbd> as a shortcut for looking up data using DOI. [#11802](https://github.com/JabRef/jabref/issues/11802) - We added a feature to rename the subgroup, with the keybinding (<kbd>F2</kbd>) for quick access. [#11896](https://github.com/JabRef/jabref/issues/11896) - We added a new functionality that displays a drop-down list of matching suggestions when typing a citation key pattern. [#12502](https://github.com/JabRef/jabref/issues/12502) - We added a new CLI that supports txt, csv, and console-based output for consistency in BibTeX entries. [#11984](https://github.com/JabRef/jabref/issues/11984) - We added a new dialog for bibliography consistency check. [#11950](https://github.com/JabRef/jabref/issues/11950) - We added a feature for copying entries to libraries, available via the context menu, with an option to include cross-references. [#12374](https://github.com/JabRef/jabref/pull/12374) - We added a new "Copy citation (text)" button in the context menu of the preview. [#12551](https://github.com/JabRef/jabref/issues/12551) - We added a new "Export to clipboard" button in the context menu of the preview. [#12551](https://github.com/JabRef/jabref/issues/12551) - We added an integrity check if a URL appears in a title. [#12354](https://github.com/JabRef/jabref/issues/12354) - We added a feature for enabling drag-and-drop of files into groups [#12540](https://github.com/JabRef/jabref/issues/12540) - We added support for reordering keywords via drag and drop, automatic alphabetical ordering, and improved pasting and editing functionalities in the keyword editor. [#10984](https://github.com/JabRef/jabref/issues/10984) - We added a new functionality where author names having multiple spaces in-between will be considered as separate user block as it does for " and ". [#12701](https://github.com/JabRef/jabref/issues/12701) - We added a set of example questions to guide users in starting meaningful AI chat interactions. [#12702](https://github.com/JabRef/jabref/issues/12702) - We added support for loading and displaying BibTeX .blg warnings in the Check integrity dialog, with custom path selection and metadata persistence. [#11998](https://github.com/JabRef/jabref/issues/11998) - We added an option to choose whether to open the file explorer in the files directory or in the last opened directory when attaching files. [#12554](https://github.com/JabRef/jabref/issues/12554) - We enhanced support for parsing XMP metadata from PDF files. [#12829](https://github.com/JabRef/jabref/issues/12829) - We added a "Preview" header in the JStyles tab in the "Select style" dialog, to make it consistent with the CSL styles tab. [#12838](https://github.com/JabRef/jabref/pull/12838) - We added automatic PubMed URL insertion when importing from PubMed if no URL is present. [#12832](https://github.com/JabRef/jabref/issues/12832/) - We added a "LTWA" abbreviation feature in the "Quality > Abbreviate journal names > LTWA" menu [#12273](https://github.com/JabRef/jabref/issues/12273/) - We added path validation to file directories in library properties dialog. [#11840](https://github.com/JabRef/jabref/issues/11840) - We now support usage of custom CSL styles in the Open/LibreOffice integration. [#12337](https://github.com/JabRef/jabref/issues/12337) - We added support for citation-only CSL styles which don't specify bibliography formatting. [#12996](https://github.com/JabRef/jabref/pull/12996) ### Changed - We reordered the settings in the 'Entry editor' tab in preferences. [#11707](https://github.com/JabRef/jabref/issues/11707) - Added "$" to the citation key generator preferences default list of characters to remove [#12536](https://github.com/JabRef/jabref/issues/12536) - We changed the message displayed in the Integrity Check Progress dialog to "Waiting for the check to finish...". [#12694](https://github.com/JabRef/jabref/issues/12694) - We moved the "Generate a new key for imported entries" option from the "Web search" tab to the "Citation key generator" tab in preferences. [#12436](https://github.com/JabRef/jabref/pull/12436) - We improved the offline parsing of BibTeX data from PDF-documents. [#12278](https://github.com/JabRef/jabref/issues/12278) - The tab bar is now hidden when only one library is open. [#9971](https://github.com/JabRef/jabref/issues/9971) - We renamed "Rename file to a given name" to "Rename files to configured filename format pattern" in the entry editor. [#12587](https://github.com/JabRef/jabref/pull/12587) - We renamed "Move DOIs from note and URL field to DOI field and remove http prefix" to "Move DOIs from 'note' field and 'URL' field to 'DOI' field and remove http prefix" in the Cleanup entries. [#12587](https://github.com/JabRef/jabref/pull/12587) - We renamed "Move preprint information from 'URL' and 'journal' field to the 'eprint' field" to "Move preprint information from 'URL' field and 'journal' field to the 'eprint' field" in the Cleanup entries. [#12587](https://github.com/JabRef/jabref/pull/12587) - We renamed "Move URL in note field to url field" to "Move URL in 'note' field to 'URL' field" in the Cleanup entries. [#12587](https://github.com/JabRef/jabref/pull/12587) - We renamed "Rename PDFs to given filename format pattern" to "Rename files to configured filename format pattern" in the Cleanup entries. [#12587](https://github.com/JabRef/jabref/pull/12587) - We renamed "Rename only PDFs having a relative path" to "Only rename files that have a relative path" in the Cleanup entries. [#12587](https://github.com/JabRef/jabref/pull/12587) - We renamed "Filename format pattern: " to "Filename format pattern (from preferences)" in the Cleanup entries. [#12587](https://github.com/JabRef/jabref/pull/12587) - When working with CSL styles in LibreOffice, citing with a new style now updates all other citations in the document to have the currently selected style. [#12472](https://github.com/JabRef/jabref/pull/12472) - We improved the user comments field visibility so that it remains displayed if it contains text. Additionally, users can now easily toggle the field on or off via buttons unless disabled in preferences. [#11021](https://github.com/JabRef/jabref/issues/11021) - The LibreOffice integration for CSL styles is now more performant. [#12472](https://github.com/JabRef/jabref/pull/12472) - The "automatically sync bibliography when citing" feature of the LibreOffice integration is now disabled by default (can be enabled in settings). [#12472](https://github.com/JabRef/jabref/pull/12472) - For the Citation key generator patterns, we reverted how `[authorsAlpha]` would behave to the original pattern and renamed the LNI-based pattern introduced in V6.0-alpha to `[authorsAlphaLNI]`. [#12499](https://github.com/JabRef/jabref/pull/12499) - We keep the list of recent files if one files could not be found. [#12517](https://github.com/JabRef/jabref/pull/12517) - During the import process, the labels indicating individual paragraphs within an abstract returned by PubMed/Medline XML are preserved. [#12527](https://github.com/JabRef/jabref/issues/12527) - We changed the "Copy Preview" button to "Copy citation (html) in the context menu of the preview. [#12551](https://github.com/JabRef/jabref/issues/12551) - Pressing Tab in empty text fields of the entry editor now moves the focus to the next field instead of inserting a tab character. [#11938](https://github.com/JabRef/jabref/issues/11938) - The embedded PostgresSQL server for the search now supports Linux and macOS ARM based distributions natively [#12607](https://github.com/JabRef/jabref/pull/12607) - We disabled the search and group fields in the sidebar when no library is opened. [#12657](https://github.com/JabRef/jabref/issues/12657) - We removed the obsolete Twitter link and added Mastodon and LinkedIn links in Help -> JabRef resources. [#12660](https://github.com/JabRef/jabref/issues/12660) - We improved the Check Integrity dialog entry interaction so that a single click focuses on the corresponding entry and a double-click both focuses on the entry and closes the dialog. [#12245](https://github.com/JabRef/jabref/issues/12245) - We improved journal abbreviation lookup with fuzzy matching to handle minor input errors and variations. [#12467](https://github.com/JabRef/jabref/issues/12467) - We changed the phrase "Cleanup entries" to "Clean up entries". [#12703](https://github.com/JabRef/jabref/issues/12703) - A tooltip now appears after 300ms (instead of 2s). [#12649](https://github.com/JabRef/jabref/issues/12649) - We improved search in preferences and keybindings. [#12647](https://github.com/JabRef/jabref/issues/12647) - We improved the performance of the LibreOffice integration when inserting CSL citations/bibliography. [#12851](https://github.com/JabRef/jabref/pull/12851) - 'Affected fields' and 'Do not wrap when saving' are now displayed as tags. [#12550](https://github.com/JabRef/jabref/issues/12550) - We revamped the UI of the Select Style dialog (in the LibreOffice panel) for CSL styles. [#12951](https://github.com/JabRef/jabref/pull/12951) - We reduced the delay in populating the list of CSL styles in the Select Style dialog of the LibreOffice panel. [#12951](https://github.com/JabRef/jabref/pull/12951) ### Fixed - We fixed an issue where pasted entries would sometimes end up in the search bar instead of the main table [#12910](https://github.com/JabRef/jabref/issues/12910) - We fixed an issue where warning signs were improperly positioned next to text fields containing capital letters. [#12884](https://github.com/JabRef/jabref/issues/12884) - We fixed an issue where the drag'n'drop functionality in entryeditor did not work [#12561](https://github.com/JabRef/jabref/issues/12561) - We fixed an issue where the F4 shortcut key did not work without opening the right-click context menu. [#6101](https://github.com/JabRef/jabref/pull/6101) - We fixed an issue where the file renaming dialog was not resizable and its size was too small for long file names. [#12518](https://github.com/JabRef/jabref/pull/12518) - We fixed an issue where the name of the untitled database was shown as a blank space in the right-click context menu's "Copy to" option. [#12459](https://github.com/JabRef/jabref/pull/12459) - We fixed an issue where the F3 shortcut key did not work without opening the right-click context menu. [#12417](https://github.com/JabRef/jabref/pull/12417) - We fixed an issue where a bib file with UFF-8 charset was wrongly loaded with a different charset [forum#5369](https://discourse.jabref.org/t/jabref-5-15-opens-bib-files-with-shift-jis-encoding-instead-of-utf-8/5369/) - We fixed an issue where new entries were inserted in the middle of the table instead of at the end. [#12371](https://github.com/JabRef/jabref/pull/12371) - We fixed an issue where removing the sort from the table did not restore the original order. [#12371](https://github.com/JabRef/jabref/pull/12371) - We fixed an issue where citation keys containing superscript (`^`) and subscript (`_`) characters in text mode were incorrectly flagged by the integrity checker. [#12391](https://github.com/JabRef/jabref/pull/12391) - We fixed an issue where JabRef icon merges with dark background [#7771](https://github.com/JabRef/jabref/issues/7771) - We fixed an issue where an entry's group was no longer highlighted on selection [#12413](https://github.com/JabRef/jabref/issues/12413) - We fixed an issue where BibTeX Strings were not included in the backup file [#12462](https://github.com/JabRef/jabref/issues/12462) - We fixed an issue where mixing JStyle and CSL style citations in LibreOffice caused two separate bibliography sections to be generated. [#12262](https://github.com/JabRef/jabref/issues/12262) - We fixed an issue in the LibreOffice integration where the formatting of text (e.g. superscript) was lost when using certain numeric CSL styles. [melting-pot#772](https://github.com/JabRef/jabref-issue-melting-pot/issues/772) - We fixed an issue where CSL style citations with citation keys having special characters (such as hyphens, colons or slashes) would not be recognized as valid by JabRef. [forum#5431](https://discourse.jabref.org/t/error-when-connecting-to-libreoffice/5431) - We fixed an issue where the `[authorsAlpha]` pattern in Citation key generator would not behave as per the user documentation. [#12312](https://github.com/JabRef/jabref/issues/12312) - We fixed an issue where import at "Search for unlinked local files" would re-add already imported files. [#12274](https://github.com/JabRef/jabref/issues/12274) - We fixed an issue where month values 21–24 (ISO 8601-2019 season codes) in Biblatex date fields were not recognized as seasons during parsing. [#12437](https://github.com/JabRef/jabref/issues/12437) - We fixed an issue where migration of "Search groups" would fail with an exception when the search query is invalid. [#12555](https://github.com/JabRef/jabref/issues/12555) - We fixed an issue where not all linked files from BibDesk in the field `bdsk-file-...` were parsed. [#12555](https://github.com/JabRef/jabref/issues/12555) - We fixed an issue where it was possible to select "Search for unlinked local files" for a new (unsaved) library. [#12558](https://github.com/JabRef/jabref/issues/12558) - We fixed an issue where user-defined keyword separator does not apply to Merge Groups. [#12535](https://github.com/JabRef/jabref/issues/12535) - We fixed an issue where duplicate items cannot be removed correctly when merging groups or keywords. [#12585](https://github.com/JabRef/jabref/issues/12585) - We fixed an issue where JabRef displayed an incorrect deletion notification when canceling entry deletion [#12645](https://github.com/JabRef/jabref/issues/12645) - We fixed an issue where JabRef displayed an incorrect deletion notification when canceling entry deletion. [#12645](https://github.com/JabRef/jabref/issues/12645) - We fixed an issue where JabRref wrote wrong field names into the PDF. [#12833](https://github.com/JabRef/jabref/pulls/12833) - We fixed an issue where an exception would occur when running abbreviate journals for multiple entries. [#12634](https://github.com/JabRef/jabref/issues/12634) - We fixed an issue Where JabRef displayed an inconsistent search results for date-related queries[#12296](https://github.com/JabRef/jabref/issues/12296) - We fixed an issue where JabRef displayed dropdown triangle in wrong place in "Search for unlinked local files" dialog [#12713](https://github.com/JabRef/jabref/issues/12713) - We fixed an issue where JabRef would not open if an invalid external journal abbreviation path was encountered. [#12776](https://github.com/JabRef/jabref/issues/12776) - We fixed a bug where LaTeX commands were not removed from filenames generated using the `[bibtexkey] - [fulltitle]` pattern. [#12188](https://github.com/JabRef/jabref/issues/12188) - We fixed an issue where JabRef interface would not properly refresh after a group removal. [#11487](https://github.com/JabRef/jabref/issues/11487) - We fixed an issue where valid DOI could not be imported if it had special characters like `<` or `>`. [#12434](https://github.com/JabRef/jabref/issues/12434) - We fixed an issue where JabRef displayed an "unknown format" message when importing a .bib file, preventing the associated groups from being imported as well. [#11025](https://github.com/JabRef/jabref/issues/11025) - We fixed an issue where the tooltip only displayed the first linked file when hovering. [#12470](https://github.com/JabRef/jabref/issues/12470) - We fixed an issue where JabRef would crash when trying to display an entry in the Citation Relations tab that had right to left text. [#12410](https://github.com/JabRef/jabref/issues/12410) - We fixed an issue where some texts in the "Citation Information" tab and the "Preferences" dialog could not be translated. [#12883](https://github.com/JabRef/jabref/pull/12883) - We fixed an issue where file names were missing the citation key according to the filename format pattern after import. [#12556](https://github.com/JabRef/jabref/issues/12556) - We fixed an issue where downloading PDFs from URLs to empty entries resulted in meaningless filenames like "-.pdf". [#12917](https://github.com/JabRef/jabref/issues/12917) - We fixed an issue where pasting a PDF URL into the main table caused an import error instead of creating a new entry. [#12911](https://github.com/JabRef/jabref/pull/12911) - We fixed an issue where libraries would sometimes be hidden when closing tabs with the Welcome tab open. [#12894](https://github.com/JabRef/jabref/issues/12894) - We fixed an issue with deleting entries in large libraries that caused it to take a long time. [#8976](https://github.com/JabRef/jabref/issues/8976) - We fixed an issue where "Reveal in file explorer" option was disabled for newly saved libraries until reopening the file. [#12722](https://github.com/JabRef/jabref/issues/12722) ### Removed - "Web of Science" [journal abbreviation list](https://docs.jabref.org/advanced/journalabbreviations) was removed. [abbrv.jabref.org#176](https://github.com/JabRef/abbrv.jabref.org/issues/176)

### Added - We added a Markdown export layout. [#12220](https://github.com/JabRef/jabref/pull/12220) - We added a "view as BibTeX" option before importing an entry from the citation relation tab. [#11826](https://github.com/JabRef/jabref/issues/11826) - We added support finding LaTeX-encoded special characters based on plain Unicode and vice versa. [#11542](https://github.com/JabRef/jabref/pull/11542) - When a search hits a file, the file icon of that entry is changed accordingly. [#11542](https://github.com/JabRef/jabref/pull/11542) - We added an AI-based chat for entries with linked PDF files. [#11430](https://github.com/JabRef/jabref/pull/11430) - We added an AI-based summarization possibility for entries with linked PDF files. [#11430](https://github.com/JabRef/jabref/pull/11430) - We added an AI section in JabRef's [preferences](https://docs.jabref.org/ai/preferences). [#11430](https://github.com/JabRef/jabref/pull/11430) - We added AI providers: OpenAI, Mistral AI, Hugging Face and Google. [#11430](https://github.com/JabRef/jabref/pull/11430), [#11736](https://github.com/JabRef/jabref/pull/11736) - We added AI providers: [Ollama](https://docs.jabref.org/ai/local-llm#step-by-step-guide-for-ollama) and GPT4All, which add the possibility to use local LLMs privately on your own device. [#11430](https://github.com/JabRef/jabref/pull/11430), [#11870](https://github.com/JabRef/jabref/issues/11870) - We added support for selecting and using CSL Styles in JabRef's OpenOffice/LibreOffice integration for inserting bibliographic and in-text citations into a document. [#2146](https://github.com/JabRef/jabref/issues/2146), [#8893](https://github.com/JabRef/jabref/issues/8893) - We added "Tools > New library based on references in PDF file" ... to create a new library based on the references section in a PDF file. [#11522](https://github.com/JabRef/jabref/pull/11522) - When converting the references section of a paper (PDF file), more than the last page is treated. [#11522](https://github.com/JabRef/jabref/pull/11522) - Added the functionality to invoke offline reference parsing explicitly. [#11565](https://github.com/JabRef/jabref/pull/11565) - The dialog for [adding an entry using reference text](https://docs.jabref.org/collect/newentryfromplaintext) is now filled with the clipboard contents as default. [#11565](https://github.com/JabRef/jabref/pull/11565) - Added minimal support for [biblatex data annotation](https://mirrors.ctan.org/macros/latex/contrib/biblatex/doc/biblatex.pdf#subsection.3.7) fields in `.layout` files. [#11505](https://github.com/JabRef/jabref/issues/11505) - Added saving of selected options in the [Lookup -> Search for unlinked local files dialog](https://docs.jabref.org/collect/findunlinkedfiles#link-the-pdfs-to-your-bib-library). [#11439](https://github.com/JabRef/jabref/issues/11439) - We enabled creating a new file link manually. [#11017](https://github.com/JabRef/jabref/issues/11017) - We added a toggle button to invert the selected groups. [#9073](https://github.com/JabRef/jabref/issues/9073) - We reintroduced the floating search in the main table. [#4237](https://github.com/JabRef/jabref/issues/4237) - We improved [cleanup](https://docs.jabref.org/finding-sorting-and-cleaning-entries/cleanupentries) of `arXiv` IDs in distributed in the fields `note`, `version`, `institution`, and `eid` fields. [#11306](https://github.com/JabRef/jabref/issues/11306) - We added a switch not to store the linked file URL, because it caused troubles at other apps. [#11735](https://github.com/JabRef/jabref/pull/11735) - When starting a new SLR, the selected catalogs now persist within and across JabRef sessions. [koppor#614](https://github.com/koppor/jabref/issues/614) - We added support for drag'n'drop on an entry in the maintable to an external application to get the entry preview dropped. [#11846](https://github.com/JabRef/jabref/pull/11846) - We added the functionality to double click on a [LaTeX citation](https://docs.jabref.org/advanced/entryeditor/latex-citations) to jump to the respective line in the LaTeX editor. [#11996](https://github.com/JabRef/jabref/issues/11996) - We added a different background color to the search bar to indicate when the search syntax is wrong. [#11658](https://github.com/JabRef/jabref/pull/11658) - We added a setting which always adds the literal "Cited on pages" text before each JStyle citation. [#11691](https://github.com/JabRef/jabref/pull/11732) - We added a new plain citation parser that uses LLMs. [#11825](https://github.com/JabRef/jabref/issues/11825) - We added support for `langid` field for biblatex libraries. [#10868](https://github.com/JabRef/jabref/issues/10868) - We added support for modifier keys when dropping a file on an entry in the main table. [#12001](https://github.com/JabRef/jabref/pull/12001) - We added an importer for SSRN URLs. [#12021](https://github.com/JabRef/jabref/pull/12021) - We added a compare button to the duplicates in the citation relations tab to open the "Possible duplicate entries" window. [#11192](https://github.com/JabRef/jabref/issues/11192) - We added automatic browser extension install on Windows for Chrome and Edge. [#6076](https://github.com/JabRef/jabref/issues/6076) - We added support to automatically open a `.bib` file in the current/parent folder if no other library is opened. [koppor#377](https://github.com/koppor/jabref/issues/377) - We added a search bar for filtering keyboard shortcuts. [#11686](https://github.com/JabRef/jabref/issues/11686) - We added new modifiers `camel_case`, `camel_case_n`, `short_title`, and `very_short_title` for the [citation key generator](https://docs.jabref.org/setup/citationkeypatterns). [#11367](https://github.com/JabRef/jabref/issues/11367) - By double clicking on a local citation in the Citation Relations Tab you can now jump the linked entry. [#11955](https://github.com/JabRef/jabref/pull/11955) - We use the menu icon for background tasks as a progress indicator to visualise an import's progress when dragging and dropping several PDF files into the main table. [#12072](https://github.com/JabRef/jabref/pull/12072) - The PDF content importer now supports importing title from upto the second page of the PDF. [#12139](https://github.com/JabRef/jabref/issues/12139) ### Changed - A search in "any" fields ignores the [groups](https://docs.jabref.org/finding-sorting-and-cleaning-entries/groups). [#7996](https://github.com/JabRef/jabref/issues/7996) - When a communication error with an [online service](https://docs.jabref.org/collect/import-using-online-bibliographic-database) occurs, JabRef displays the HTTP error. [#11223](https://github.com/JabRef/jabref/issues/11223) - The Pubmed/Medline Plain importer now imports the PMID field as well [#11488](https://github.com/JabRef/jabref/issues/11488) - The 'Check for updates' menu bar button is now always enabled. [#11485](https://github.com/JabRef/jabref/pull/11485) - JabRef respects the [configuration for storing files relative to the .bib file](https://docs.jabref.org/finding-sorting-and-cleaning-entries/filelinks#directories-for-files) in more cases. [#11492](https://github.com/JabRef/jabref/pull/11492) - JabRef does not show finished background tasks in the status bar popup. [#11821](https://github.com/JabRef/jabref/pull/11821) - We enhanced the indexing speed. [#11502](https://github.com/JabRef/jabref/pull/11502) - When dropping a file into the main table, after copy or move, the file is now put in the [configured directory and renamed according to the configured patterns](https://docs.jabref.org/finding-sorting-and-cleaning-entries/filelinks#filename-format-and-file-directory-pattern). [#12001](https://github.com/JabRef/jabref/pull/12001) - ⚠️ Renamed command line parameters `embeddBibfileInPdf` to `embedBibFileInPdf`, `writeMetadatatoPdf` to `writeMetadataToPdf`, and `writeXMPtoPdf` to `writeXmpToPdf`. [#11575](https://github.com/JabRef/jabref/pull/11575) - The browse button for a Custom theme now opens in the directory of the current used CSS file. [#11597](https://github.com/JabRef/jabref/pull/11597) - The browse button for a Custom exporter now opens in the directory of the current used exporter file. [#11717](https://github.com/JabRef/jabref/pull/11717) - ⚠️ We relaxed the escaping requirements for [bracketed patterns](https://docs.jabref.org/setup/citationkeypatterns), which are used for the [citaton key generator](https://docs.jabref.org/advanced/entryeditor#autogenerate-citation-key) and [filename and directory patterns](https://docs.jabref.org/finding-sorting-and-cleaning-entries/filelinks#auto-linking-files). One only needs to write `\"` if a quote sign should be escaped. All other escapings are not necessary (and working) any more. [#11967](https://github.com/JabRef/jabref/pull/11967) - When importing BibTeX data starging from on a PDF, the XMP metadata takes precedence over Grobid data. [#11992](https://github.com/JabRef/jabref/pull/11992) - JabRef now uses TLS 1.2 for all HTTPS connections. [#11852](https://github.com/JabRef/jabref/pull/11852) - We improved the functionality of getting BibTeX data out of PDF files. [#11999](https://github.com/JabRef/jabref/issues/11999) - We improved the display of long messages in the integrity check dialog. [#11619](https://github.com/JabRef/jabref/pull/11619) - We improved the undo/redo buttons in the main toolbar and main menu to be disabled when there is nothing to undo/redo. [#8807](https://github.com/JabRef/jabref/issues/8807) - We improved the DOI detection in PDF imports. [#11782](https://github.com/JabRef/jabref/pull/11782) - We improved the performance when pasting and importing entries in an existing library. [#11843](https://github.com/JabRef/jabref/pull/11843) - When fulltext search is selected but indexing is deactivated, a dialog is now shown asking if the user wants to enable indexing now [#9491](https://github.com/JabRef/jabref/issues/9491) - We changed instances of 'Search Selected' to 'Search Pre-configured' in Web Search Preferences UI. [#11871](https://github.com/JabRef/jabref/pull/11871) - We added a new CSS style class `main-table` for the main table. [#11881](https://github.com/JabRef/jabref/pull/11881) - When renaming a file, the old extension is now used if there is none provided in the new name. [#11903](https://github.com/JabRef/jabref/issues/11903) - When importing a file using "Find Unlinked Files", when one or more file directories are available, the file path will be relativized where possible [koppor#549](https://github.com/koppor/jabref/issues/549) - We added minimum window sizing for windows dedicated to creating new entries [#11944](https://github.com/JabRef/jabref/issues/11944) - We changed the name of the library-based file directory from 'General File Directory' to 'Library-specific File Directory' per issue. [#571](https://github.com/koppor/jabref/issues/571) - We changed the defualt [unwanted charachters](https://docs.jabref.org/setup/citationkeypatterns#removing-unwanted-characters) in the citation key generator and allow a dash (`-`) and colon (`:`) being part of a citation key. [#12144](https://github.com/JabRef/jabref/pull/12144) - The CitationKey column is now a default shown column for the entry table. [#10510](https://github.com/JabRef/jabref/issues/10510) - We disabled the actions "Open Terminal here" and "Reveal in file explorer" for unsaved libraries. [#11920](https://github.com/JabRef/jabref/issues/11920) - JabRef now opens the corresponding directory in the library properties when "Browse" is clicked. [#12223](https://github.com/JabRef/jabref/pull/12223) - We changed the icon for macOS to be more consistent with Apple's Guidelines [#8443](https://github.com/JabRef/jabref/issues/8443) ### Fixed - We fixed an issue where certain actions were not disabled when no libraries were open. [#11923](https://github.com/JabRef/jabref/issues/11923) - We fixed an issue where the "Check for updates" preference was not saved. [#11485](https://github.com/JabRef/jabref/pull/11485) - We fixed an issue where an exception was thrown after changing "show preview as a tab" in the preferences. [#11515](https://github.com/JabRef/jabref/pull/11515) - We fixed an issue where JabRef put file paths as absolute path when an entry was created using drag and drop of a PDF file. [#11173](https://github.com/JabRef/jabref/issues/11173) - We fixed an issue that online and offline mode for new library creation were handled incorrectly. [#11565](https://github.com/JabRef/jabref/pull/11565) - We fixed an issue with colors in the search bar when dark theme is enabled. [#11569](https://github.com/JabRef/jabref/issues/11569) - We fixed an issue with query transformers (JStor and others). [#11643](https://github.com/JabRef/jabref/pull/11643) - We fixed an issue where a new unsaved library was not marked with an asterisk. [#11519](https://github.com/JabRef/jabref/pull/11519) - We fixed an issue where JabRef starts without window decorations. [#11440](https://github.com/JabRef/jabref/pull/11440) - We fixed an issue where the entry preview highlight was not working when searching before opening the entry editor. [#11659](https://github.com/JabRef/jabref/pull/11659) - We fixed an issue where text in Dark mode inside "Citation information" was not readable. [#11512](https://github.com/JabRef/jabref/issues/11512) - We fixed an issue where the selection of an entry in the table lost after searching for a group. [#3176](https://github.com/JabRef/jabref/issues/3176) - We fixed the non-functionality of the option "Automatically sync bibliography when inserting citations" in the OpenOffice panel, when enabled in case of JStyles. [#11684](https://github.com/JabRef/jabref/issues/11684) - We fixed an issue where the library was not marked changed after a migration. [#11542](https://github.com/JabRef/jabref/pull/11542) - We fixed an issue where rebuilding the full-text search index was not working. [#11374](https://github.com/JabRef/jabref/issues/11374) - We fixed an issue where the progress of indexing linked files showed an incorrect number of files. [#11378](https://github.com/JabRef/jabref/issues/11378) - We fixed an issue where the full-text search results were incomplete. [#8626](https://github.com/JabRef/jabref/issues/8626) - We fixed an issue where search result highlighting was incorrectly highlighting the boolean operators. [#11595](https://github.com/JabRef/jabref/issues/11595) - We fixed an issue where search result highlighting was broken at complex searches. [#8067](https://github.com/JabRef/jabref/issues/8067) - We fixed an exception when searching for unlinked files. [#11731](https://github.com/JabRef/jabref/issues/11731) - We fixed an issue with the link to the full text at the BVB fetcher. [#11852](https://github.com/JabRef/jabref/pull/11852) - We fixed an issue where two contradicting notifications were shown when cutting an entry in the main table. [#11724](https://github.com/JabRef/jabref/pull/11724) - We fixed an issue where unescaped braces in the arXiv fetcher were not treated. [#11704](https://github.com/JabRef/jabref/issues/11704) - We fixed an issue where HTML instead of the fulltext pdf was downloaded when importing arXiv entries. [#4913](https://github.com/JabRef/jabref/issues/4913) - We fixed an issue where the keywords and crossref fields were not properly focused. [#11177](https://github.com/JabRef/jabref/issues/11177) - We fixed handling of `\"` in [bracketed patterns](https://docs.jabref.org/setup/citationkeypatterns) containing a RegEx. [#11967](https://github.com/JabRef/jabref/pull/11967) - We fixed an issue where the Undo/Redo buttons were active even when all libraries are closed. [#11837](https://github.com/JabRef/jabref/issues/11837) - We fixed an issue where recently opened files were not displayed in the main menu properly. [#9042](https://github.com/JabRef/jabref/issues/9042) - We fixed an issue where the DOI lookup would show an error when a DOI was found for an entry. [#11850](https://github.com/JabRef/jabref/issues/11850) - We fixed an issue where <kbd>Tab</kbd> cannot be used to jump to next field in some single-line fields. [#11785](https://github.com/JabRef/jabref/issues/11785) - We fixed an issue where the "Do not ask again" checkbox was not working, when asking for permission to use Grobid [koppor#556](https://github.com/koppor/jabref/issues/566). - We fixed an issue where we display warning message for moving attached open files. [#10121](https://github.com/JabRef/jabref/issues/10121) - We fixed an issue where it was not possible to select selecting content of other user's comments.[#11106](https://github.com/JabRef/jabref/issues/11106) - We fixed an issue when handling URLs containing a pipe (`|`) character. [#11876](https://github.com/JabRef/jabref/issues/11876) - We fixed an issue where web search preferences "Custom API key" table modifications not discarded. [#11925](https://github.com/JabRef/jabref/issues/11925) - We fixed an issue when opening attached files in [extra file columns](https://docs.jabref.org/finding-sorting-and-cleaning-entries/filelinks#adding-additional-columns-to-entry-table-for-file-types). [#12005](https://github.com/JabRef/jabref/issues/12005) - We fixed an issue where trying to open a library from a failed mounted directory on Mac would cause an error. [#10548](https://github.com/JabRef/jabref/issues/10548) - We fixed an issue when the preview was out of sync. [#9172](https://github.com/JabRef/jabref/issues/9172) - We fixed an issue where identifier paste couldn't work with Unicode REPLACEMENT CHARACTER. [#11986](https://github.com/JabRef/jabref/issues/11986) - We fixed an issue when click on entry at "Check Integrity" wasn't properly focusing the entry and field. [#11997](https://github.com/JabRef/jabref/issues/11997) - We fixed an issue with the ui not scaling when changing the font size [#11219](https://github.com/JabRef/jabref/issues/11219) - We fixed an issue where a custom application for external file types would not be saved [#112311](https://github.com/JabRef/jabref/issues/12311) - We fixed an issue where a file that no longer exists could not be deleted from an entry using keyboard shortcut [#9731](https://github.com/JabRef/jabref/issues/9731) ### Removed - We removed the description of search strings. [#11542](https://github.com/JabRef/jabref/pull/11542) - We removed support for importing using the SilverPlatterImporter (`Record INSPEC`). [#11576](https://github.com/JabRef/jabref/pull/11576) - We removed support for automatically generating file links using the CLI (`--automaticallySetFileLinks`).

### Added - We made new groups automatically to focus upon creation. [#11449](https://github.com/JabRef/jabref/issues/11449) ### Fixed - We fixed an issue where JabRef was no longer built for Intel based macs (x86) [#11468](https://github.com/JabRef/jabref/issues/11468) - We fixed usage when using running on Snapcraft. [#11465](https://github.com/JabRef/jabref/issues/11465) - We fixed detection for `soffice.exe` on Windows. [#11478](https://github.com/JabRef/jabref/pull/11478) - We fixed an issue where saving preferences when importing preferences on first run in a snap did not work [forum#4399](https://discourse.jabref.org/t/how-to-report-problems-in-the-distributed-version-5-14-ensuring-that-one-can-no-longer-work-with-jabref/4399/5)

## [5.13] – 2024-04-01 ### Added - We converted the "Custom API key" list to a table to be more accessible. [#10926](https://github.com/JabRef/jabref/issues/10926) - We added a "refresh" button for the LaTeX citations tab in the entry editor. [#10584](https://github.com/JabRef/jabref/issues/10584) - We added the possibility to show the BibTeX source in the [web search](https://docs.jabref.org/collect/import-using-online-bibliographic-database) import screen. [#560](https://github.com/koppor/jabref/issues/560) - We added a fetcher for [ISIDORE](https://isidore.science/), simply paste in the link into the text field or the last 6 digits in the link that identify that paper. [#10423](https://github.com/JabRef/jabref/issues/10423) - When importing entries form the "Citation relations" tab, the field [cites](https://docs.jabref.org/advanced/entryeditor/entrylinks) is now filled according to the relationship between the entries. [#10572](https://github.com/JabRef/jabref/pull/10752) - We added a new integrity check and clean up option for strings having Unicode characters not encoded in [Unicode "Normalization Form Canonical Composition" (NFC)](https://en.wikipedia.org/wiki/Unicode_equivalence#Normal_forms"). [#10506](https://github.com/JabRef/jabref/issues/10506) - We added a new group icon column to the main table showing the icons of the entry's groups. [#10801](https://github.com/JabRef/jabref/pull/10801) - When deleting an entry, the files linked to the entry are now optionally deleted as well. [#10509](https://github.com/JabRef/jabref/issues/10509) - We added support to move the file to the system trash (instead of deleting it). [#10591](https://github.com/JabRef/jabref/pull/10591) - We added ability to jump to an entry in the command line using `-j CITATIONKEY`. [koppor#540](https://github.com/koppor/jabref/issues/540) - We added a new boolean to the style files for Openoffice/Libreoffice integration to switch between ZERO_WIDTH_SPACE (default) and no space. [#10843](https://github.com/JabRef/jabref/pull/10843) - When pasting HTML into the abstract or a comment field, the hypertext is automatically converted to Markdown. [#10558](https://github.com/JabRef/jabref/issues/10558) - We added the possibility to redownload files that had been present but are no longer in the specified location. [#10848](https://github.com/JabRef/jabref/issues/10848) - We added the citation key pattern `[camelN]`. Equivalent to the first N words of the `[camel]` pattern. - We added importing of static groups and linked files from BibDesk .bib files. [#10381](https://github.com/JabRef/jabref/issues/10381) - We added ability to export in CFF (Citation File Format) [#10661](https://github.com/JabRef/jabref/issues/10661). - We added ability to push entries to TeXworks. [#3197](https://github.com/JabRef/jabref/issues/3197) - We added the ability to zoom in and out in the document viewer using <kbd>Ctrl</kbd> + <kbd>Scroll</kbd>. [#10964](https://github.com/JabRef/jabref/pull/10964) - We added a Cleanup for removing non-existent files and grouped the related options [#10929](https://github.com/JabRef/jabref/issues/10929) - We added the functionality to parse the bibliography of PDFs using the GROBID online service. [#10200](https://github.com/JabRef/jabref/issues/10200) - We added a seperated search bar for the global search window. [#11032](https://github.com/JabRef/jabref/pull/11032) - We added ability to double-click on an entry in the global search window to select the corresponding entry in the main table. [#11010](https://github.com/JabRef/jabref/pull/11010) - We added support for BibTeX String constants during copy & paste between libraries. [#10872](https://github.com/JabRef/jabref/issues/10872) - We added the field `langid` which is important for hyphenation and casing in LaTeX. [#10868](https://github.com/JabRef/jabref/issues/10868) - Event log entries can now be copied via a context menu. [#11100](https://github.com/JabRef/jabref/issues/11100) ### Changed - The "Automatically open folders of attached files" preference default status has been changed to enabled on Windows. [koppor#56](https://github.com/koppor/jabref/issues/56) - The Custom export format now uses the custom DOI base URI in the preferences for the `DOICheck`, if activated [forum#4084](https://discourse.jabref.org/t/export-html-disregards-custom-doi-base-uri/4084) - The index directories for full text search have now more readable names to increase debugging possibilities using Apache Lucense's Lurk. [#10193](https://github.com/JabRef/jabref/issues/10193) - The fulltext search also indexes files ending with .pdf (but do not having an explicit file type set). [#10193](https://github.com/JabRef/jabref/issues/10193) - We changed the arrangement of the lists in the "Citation relations" tab. `Cites` are now on the left and `Cited by` on the right [#10572](https://github.com/JabRef/jabref/pull/10752) - Sub libraries based on `aux` file can now also be generated if some citations are not found library. [#10775](https://github.com/JabRef/jabref/pull/10775) - We rearranged the tab order in the entry editor and renamed the "Scite Tab" to "Citation information". [#10821](https://github.com/JabRef/jabref/issues/10821) - We changed the duplicate handling in the Import entries dialog. Potential duplicate entries are marked with an icon and importing will now trigger the merge dialog [#10914](https://github.com/JabRef/jabref/pull/10914) - We made the command "Push to TexShop" more robust to allow cite commands with a character before the first slash. [forum#2699](https://discourse.jabref.org/t/push-to-texshop-mac/2699/17?u=siedlerchr) - We only show the notification "Saving library..." if the library contains more than 2000 entries. [#9803](https://github.com/JabRef/jabref/issues/9803) - JabRef now keeps previous log files upon start. [#11023](https://github.com/JabRef/jabref/pull/11023) - When normalizing author names, complete enclosing braces are kept. [#10031](https://github.com/JabRef/jabref/issues/10031) - We enhanced the dialog for adding new fields in the content selector with a selection box containing a list of standard fields. [#10912](https://github.com/JabRef/jabref/pull/10912) - We store the citation relations in an LRU cache to avoid bloating the memory and out-of-memory exceptions. [#10958](https://github.com/JabRef/jabref/issues/10958) - Keywords field are now displayed as tags. [#10910](https://github.com/JabRef/jabref/pull/10910) - Citation relations now get more information, and have quick access to view the articles in a browser without adding them to the library [#10869](https://github.com/JabRef/jabref/issues/10869) - Importer/Exporter for CFF format now supports JabRef `cites` and `related` relationships, as well as all fields from the CFF specification. [#10993](https://github.com/JabRef/jabref/issues/10993) - The XMP-Exporter no longer writes the content of the `file`-field. [#11083](https://github.com/JabRef/jabref/pull/11083) - We added notes, checks and warnings for the case of selection of non-empty directories while starting a new Systematic Literature Review. [#600](https://github.com/koppor/jabref/issues/600) - Text in the import dialog (web search results) will now be wrapped to prevent horizontal scrolling. [#10931](https://github.com/JabRef/jabref/issues/10931) - We improved the error handling when invalid bibdesk-files are encountered [#11117](https://github.com/JabRef/jabref/issues/11117) ### Fixed - We fixed an issue where the fulltext search button in entry editor used to disappear on click till the search is completed. [#10425](https://github.com/JabRef/jabref/issues/10425) - We fixed an issue where attempting to cancel the importing/generation of an entry from id is ignored. [#10508](https://github.com/JabRef/jabref/issues/10508) - We fixed an issue where the preview panel showing the wrong entry (an entry that is not selected in the entry table). [#9172](https://github.com/JabRef/jabref/issues/9172) - We fixed an issue where HTML-reserved characters like '&' and '<', in addition to HTML entities like '&amp;' were not rendered correctly in entry preview. [#10677](https://github.com/JabRef/jabref/issues/10677) - The last page of a PDF is now indexed by the full text search. [#10193](https://github.com/JabRef/jabref/issues/10193) - The entry editor respects the configured custom tabs when showing "Other fields". [#11012](https://github.com/JabRef/jabref/pull/11012) - The default owner of an entry can be changed again. [#10924](https://github.com/JabRef/jabref/issues/10924) - We fixed an issue where the duplicate check did not take umlauts or other LaTeX-encoded characters into account. [#10744](https://github.com/JabRef/jabref/pull/10744) - We fixed the colors of the icon on hover for unset special fields. [#10431](https://github.com/JabRef/jabref/issues/10431) - We fixed an issue where the CrossRef field did not work if autocompletion was disabled [#8145](https://github.com/JabRef/jabref/issues/8145) - In biblatex mode, JabRef distinguishes between "Optional fields" and "Optional fields 2" again. [#11022](https://github.com/JabRef/jabref/pull/11022) - We fixed an issue where exporting`@electronic` and `@online` entry types to the Office XMl would duplicate the field `title` [#10807](https://github.com/JabRef/jabref/issues/10807) - We fixed an issue where the `CommentsTab` was not properly formatted when the `defaultOwner` contained capital or special letters. [#10870](https://github.com/JabRef/jabref/issues/10870) - We fixed an issue where the `File -> Close library` menu item was not disabled when no library was open. [#10948](https://github.com/JabRef/jabref/issues/10948) - We fixed an issue where the Document Viewer would show the PDF in only half the window when maximized. [#10934](https://github.com/JabRef/jabref/issues/10934) - Clicking on the crossref and related tags in the entry editor jumps to the linked entry. [#5484](https://github.com/JabRef/jabref/issues/5484) [#9369](https://github.com/JabRef/jabref/issues/9369) - We fixed an issue where JabRef could not parse absolute file paths from Zotero exports. [#10959](https://github.com/JabRef/jabref/issues/10959) - We fixed an issue where an exception occured when toggling between "Live" or "Locked" in the internal Document Viewer. [#10935](https://github.com/JabRef/jabref/issues/10935) - When fetching article information fom IEEE Xplore, the em dash is now converted correctly. [koppor#286](https://github.com/koppor/jabref/issues/286) - Fixed an issue on Windows where the browser extension reported failure to send an entry to JabRef even though it was sent properly. [JabRef-Browser-Extension#493](https://github.com/JabRef/JabRef-Browser-Extension/issues/493) - Fixed an issue on Windows where TeXworks path was not resolved if it was installed with MiKTeX. [#10977](https://github.com/JabRef/jabref/issues/10977) - We fixed an issue with where JabRef would throw an error when using MathSciNet search, as it was unable to parse the fetched JSON coreectly. [10996](https://github.com/JabRef/jabref/issues/10996) - We fixed an issue where the "Import by ID" function would throw an error when a DOI that contains URL-encoded characters was entered. [#10648](https://github.com/JabRef/jabref/issues/10648) - We fixed an issue with handling of an "overflow" of authors at `[authIniN]`. [#11087](https://github.com/JabRef/jabref/issues/11087) - We fixed an issue where an exception occurred when selecting entries in the web search results. [#11081](https://github.com/JabRef/jabref/issues/11081) - When a new library is unsaved, there is now no warning when fetching entries with PDFs. [#11075](https://github.com/JabRef/jabref/issues/11075) - We fixed an issue where the message "The libary has been modified by another program" occurred when editing library metadata and saving the library. [#4877](https://github.com/JabRef/jabref/issues/4877) ### Removed - We removed the predatory journal checks due to a high rate of false positives. [#11066](https://github.com/JabRef/jabref/pull/11066)

### Added - We added a scite.ai tab in the entry editor that retrieves 'Smart Citation' tallies for citations that have a DOI. [koppor#375](https://github.com/koppor/jabref/issues/375) - We added a dropdown menu to let users change the reference library during AUX file import. [#10472](https://github.com/JabRef/jabref/issues/10472) - We added a button to let users reset the cite command to the default value. [#10569](https://github.com/JabRef/jabref/issues/10569) - We added the option to use System Preference for Light/Dark Theme [#8729](https://github.com/JabRef/jabref/issues/8729). - We added [scholar.archive.org](https://scholar.archive.org/) as a new fetcher. [#10498](https://github.com/JabRef/jabref/issues/10498) - We integrated predatory journal checking as part of the Integrity Checker based on the [check-bib-for-predatory](https://github.com/CfKu/check-bib-for-predatory). [koppor#348](https://github.com/koppor/jabref/issues/348) - We added a 'More options' section in the main table right click menu opening the preferences dialog. [#9432](https://github.com/JabRef/jabref/issues/9432) - When creating a new group, it inherits the icon of the parent group. [#10521](https://github.com/JabRef/jabref/pull/10521) ### Changed - We moved the location of the 'Open only one instance of JabRef' preference option from "Network" to "General". [#9306](https://github.com/JabRef/jabref/issues/9306) - The two previews in the change resolver dialog now have their scrollbars synchronized. [#9576](https://github.com/JabRef/jabref/issues/9576). - We changed the setting of the keyword separator to accept a single character only. [#177](https://github.com/koppor/jabref/issues/177) - We replaced "SearchAll" in Web Search by "Search Selected". [#10556](https://github.com/JabRef/jabref/issues/10556) - Short DOI formatter now checks, if the value is already formatted. If so, it returns the value instead of calling the ShortDOIService again. [#10589](https://github.com/JabRef/jabref/issues/10589) - We upgraded to JavaFX 21.0.1. As a consequence JabRef requires now macOS 11 or later and GTK 3.8 or later on Linux [10627](https://github.com/JabRef/jabref/pull/10627). - A user-specific comment fields is not enabled by default, but can be enabled using the "Add" button. [#10424](https://github.com/JabRef/jabref/issues/10424) - We upgraded to Lucene 9.9 for the fulltext search. The search index will be rebuild. [#10686](https://github.com/JabRef/jabref/pull/10686) - When using "Copy..." -> "Copy citation key", the delimiter configured at "Push applications" is respected. [#10707](https://github.com/JabRef/jabref/pull/10707) ### Fixed - We fixed an issue where the added protected term has unwanted leading and trailing whitespaces, where the formatted text has unwanted empty brackets and where the word at the cursor in the textbox can be added to the list. [#10415](https://github.com/JabRef/jabref/issues/10415) - We fixed an issue where in the merge dialog the file field of entries was not correctly merged when the first and second entry both contained values inside the file field. [#10572](https://github.com/JabRef/jabref/issues/10572) - We fixed some small inconsistencies in the user interface. [#10507](https://github.com/JabRef/jabref/issues/10507) [#10458](https://github.com/JabRef/jabref/issues/10458) [#10660](https://github.com/JabRef/jabref/issues/10660) - We fixed the issue where the Hayagriva YAML exporter would not include a parent field for the publisher/series. [#10596](https://github.com/JabRef/jabref/issues/10596) - We fixed issues in the external file type dialog w.r.t. duplicate entries in the case of a language switch. [#10271](https://github.com/JabRef/jabref/issues/10271) - We fixed an issue where the right-click action "Copy cite..." did not respect the configured citation command under "External Programs" -> "[Push Applications](https://docs.jabref.org/cite/pushtoapplications)" [#10615](https://github.com/JabRef/jabref/issues/10615) ### Removed - We removed duplicate filtering and sorting operations in the MainTable when editing BibEntries. [#10619](https://github.com/JabRef/jabref/pull/10619)

### Added - We added the ability to sort subgroups in Z-A order, as well as by ascending and descending number of subgroups. [#10249](https://github.com/JabRef/jabref/issues/10249) - We added the possibility to find (and add) papers that cite or are cited by a given paper. [#6187](https://github.com/JabRef/jabref/issues/6187) - We added an error-specific message for when a download from a URL fails. [#9826](https://github.com/JabRef/jabref/issues/9826) - We added support for customizing the citation command (e.g., `[@key1,@key2]`) when [pushing to external applications](https://docs.jabref.org/cite/pushtoapplications). [#10133](https://github.com/JabRef/jabref/issues/10133) - We added an integrity check for more special characters. [#8712](https://github.com/JabRef/jabref/issues/8712) - We added protected terms described as "Computer science". [#10222](https://github.com/JabRef/jabref/pull/10222) - We added a link "Get more themes..." in the preferences to that points to [themes.jabref.org](https://themes.jabref.org) allowing the user to download new themes. [#10243](https://github.com/JabRef/jabref/issues/10243) - We added a fetcher for [LOBID](https://lobid.org/resources/api) resources. [koppor#386](https://github.com/koppor/jabref/issues/386) - When in `biblatex` mode, the [integrity check](https://docs.jabref.org/finding-sorting-and-cleaning-entries/checkintegrity) for journal titles now also checks the field `journal`. - We added support for exporting to Hayagriva YAML format. [#10382](https://github.com/JabRef/jabref/issues/10382) - We added support for pushing citations to [TeXShop](https://pages.uoregon.edu/koch/texshop/) on macOS [forum#2699](https://discourse.jabref.org/t/push-to-texshop-mac/2699). - We added the 'Bachelor's thesis' type for Biblatex's 'Thesis' EntryType [#10029](https://github.com/JabRef/jabref/issues/10029). ### Changed - The export formats `listrefs`, `tablerefs`, `tablerefsabsbib`, now use the ISO date format in the footer [#10383](https://github.com/JabRef/jabref/pull/10383). - When searching for an identifier in the "Web search", the title of the search window is now "Identifier-based Web Search". [#10391](https://github.com/JabRef/jabref/pull/10391) - The ampersand checker now skips verbatim fields (`file`, `url`, ...). [#10419](https://github.com/JabRef/jabref/pull/10419) - If no existing document is selected for exporting "XMP annotated pdf" JabRef will now create a new PDF file with a sample text and the metadata. [#10102](https://github.com/JabRef/jabref/issues/10102) - We modified the DOI cleanup to infer the DOI from an ArXiV ID if it's present. [#10426](https://github.com/JabRef/jabref/issues/10426) - The ISI importer uses the field `comment` for notes (instead of `review). [#10478](https://github.com/JabRef/jabref/pull/10478) - If no existing document is selected for exporting "Embedded BibTeX pdf" JabRef will now create a new PDF file with a sample text and the metadata. [#10101](https://github.com/JabRef/jabref/issues/10101) - Translated titles format no longer raise a warning. [#10459](https://github.com/JabRef/jabref/issues/10459) - We re-added the empty grey containers in the groups panel to keep an indicator for the current selected group, if displaying of group item count is turned off [#9972](https://github.com/JabRef/jabref/issues/9972) ### Fixed - We fixed an issue where "Move URL in note field to url field" in the cleanup dialog caused an exception if no note field was present [forum#3999](https://discourse.jabref.org/t/cleanup-entries-cant-get-it-to-work/3999) - It is possible again to use "current table sort order" for the order of entries when saving. [#9869](https://github.com/JabRef/jabref/issues/9869) - Passwords can be stored in GNOME key ring. [#10274](https://github.com/JabRef/jabref/issues/10274) - We fixed an issue where groups based on an aux file could not be created due to an exception [#10350](https://github.com/JabRef/jabref/issues/10350) - We fixed an issue where the JabRef browser extension could not communicate with JabRef under macOS due to missing files. You should use the `.pkg` for the first installation as it updates all necessary files for the extension [#10308](https://github.com/JabRef/jabref/issues/10308) - We fixed an issue where the ISBN fetcher returned the entrytype `misc` for certain ISBN numbers [#10348](https://github.com/JabRef/jabref/issues/10348) - We fixed a bug where an exception was raised when saving less than three export save orders in the preference. [#10157](https://github.com/JabRef/jabref/issues/10157) - We fixed an issue where it was possible to create a group with no name or with a group separator inside the name [#9776](https://github.com/JabRef/jabref/issues/9776) - Biblatex's `journaltitle` is now also respected for showing the journal information. [#10397](https://github.com/JabRef/jabref/issues/10397) - JabRef does not hang anymore when exporting via CLI. [#10380](https://github.com/JabRef/jabref/issues/10380) - We fixed an issue where it was not possible to save a library on a network share under macOS due to an exception when acquiring a file lock [#10452](https://github.com/JabRef/jabref/issues/10452) - We fixed an issue where exporting "XMP annotated pdf" without selecting an existing document would produce an exception. [#10102](https://github.com/JabRef/jabref/issues/10102) - We fixed an issue where the "Enabled" column in the "Protected terms files" tab in the preferences could not be resized [#10285](https://github.com/JabRef/jabref/issues/10285) - We fixed an issue where after creation of a new library, the new library was not focused. [koppor#592](https://github.com/koppor/jabref/issues/592) - We fixed an issue where double clicking on an url in the file field would trigger an exception instead of opening the browser [#10480](https://github.com/JabRef/jabref/pull/10480) - We fixed an issue where scrolling was impossible on dragging a citation on the groups panel. [#9754](https://github.com/JabRef/jabref/issues/9754) - We fixed an issue where exporting "Embedded BibTeX pdf" without selecting an existing document would produce an exception. [#10101](https://github.com/JabRef/jabref/issues/10101) - We fixed an issue where there was a failure to access the url link for "eprint" for the ArXiv entry.[#10474](https://github.com/JabRef/jabref/issues/10474) - We fixed an issue where it was not possible to connect to a shared database once a group with entries was added or other metadata modified [#10336](https://github.com/JabRef/jabref/issues/10336) - We fixed an issue where middle-button paste in X not always worked [#7905](https://github.com/JabRef/jabref/issues/7905)