Misleading text in rnaSPAdes "ss" parameter results in error
bug
### Description of the bug
In the rnaSPAdes configuration when setting the pipeline up, there is some text that says:
```
Set strand-specific type for rnaSPAdes. Use `--ss rf` when first read in pair corresponds to reverse gene strand (antisense data, e.g. obtained via dUTP protocol) and `--ss fr` otherwise (forward).
```
To me, this suggests that you should enter `--ss rf` when configuring that parameter, however this results in the error below. The parameter entered here should just be `rf` or `fr`. See screenshot below to illustrate where we went wrong...
```
spades.py: error: argument --ss: expected one argument
```
I would suggest clarifying the text by changing "Use --ss rf when first read in pair..." to be "Use rf when first read in pair"

### Command used and terminal output
```console
```
### Relevant files
_No response_
### System information
_No response_
关闭于 2025-01-30 1 条评论