ITADN

problematic updates or downloads from dbCAN

#46OpenAdamVS 创建于 2026-03-12
A
AdamVScommented
Hi Jon, There is a reoccurring error with downloading dbCAN databases from http://dbcan-hcc.unl.edu/download. This is somewhat similar to an earlier issue [https://github.com/nextgenusfs/funannotate2/issues/39](url). During `funannotate2 install -d all` download.json (called line 114 from `install.py`) tries to fetch ... ``` "dbCAN": "http://dbcan-hcc.unl.edu/download/dbCAN-HMMdb-V14.txt", "dbCAN-tsv": "http://dbcan-hcc.unl.edu/download/Databases/V12/CAZyDB.08062022.fam-activities.txt", "dbCAN-log": "http://dbcan-hcc.unl.edu/download/Databases/V11/readme.txt", ``` ... but this fails from no response by dbCAN, although I can access dbCAN2/3 pages Perhaps there can be alternative options to fetching the download links using the `download.json` from the funannotate2 github repo, or that there can be a flag for when the files are already locally sourced? cheers and thanks for the help, Adam ``` funannotate2 v26.2.12 Python 3.12.13 ``` Ubuntu 25.10
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