PASS call but GT is 0/0?
Dear,
I got a mutation in the VCF from DeepSomatic like this:
chr17 45024340 . G T 10.8 PASS . GT:GQ:DP:AD:VAF:PL 0/0:8:98:0,95:0.969388:0,1,0
It is passed, but GT is 0/0. Do I believe it is a somatic mutation, or do I need to filter it out?
Thank you
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