ITADN

LTO option failing to configure?

#90Closedjonkeane 创建于 2025-03-09
J
jonkeanecommented
This might be an error with how we have this setup in our CI in Arrow, but we've started to get the following errors on our LTO jobs which use the gcc13 image (following #57). We do set `INSTALL_ARGS=--use-LTO` and this worked fine up until two or so weeks ago. The error we're getting is: ``` #21 0.343 package ‘stats’ in options("defaultPackages") was not found #21 0.346 > options(warn=2); install.packages('remotes'); remotes::install_cran(c('glue', 'rcmdcheck', 'sys')); remotes::install_deps(INSTALL_opts = '') #21 0.349 Installing package into ‘/root/R/x86_64-pc-linux-gnu-library/4.5’ #21 0.349 (as ‘lib’ is unspecified) #21 1.042 trying URL 'https://cloud.r-project.org/src/contrib/remotes_2.5.0.tar.gz' #21 1.401 Content type 'application/x-gzip' length 164496 bytes (160 KB) #21 1.401 ================================================== #21 1.403 downloaded 160 KB #21 1.403 #21 1.599 During startup - Warning message: #21 1.599 package ‘stats’ in options("defaultPackages") was not found #21 1.744 * installing *source* package ‘remotes’ ... #21 1.744 ** this is package ‘remotes’ version ‘2.5.0’ #21 1.750 ** package ‘remotes’ successfully unpacked and MD5 sums checked #21 1.751 ** using staged installation #21 1.772 ** R #21 1.793 ** inst #21 1.794 ** byte-compile and prepare package for lazy loading #21 2.064 ERROR: lazy loading failed for package ‘remotes’ #21 2.065 During startup - Warning message: #21 2.065 package ‘stats’ in options("defaultPackages") was not found #21 2.065 Error in dyn.load(file, DLLpath = DLLpath, ...) : #21 2.065 unable to load shared object '/opt/R/devel-gcc13/lib/R/library/stats/libs/stats.so': #21 2.065 /opt/R/devel-gcc13/lib/R/lib/libRlapack.so: undefined symbol: dgemmtr_ #21 2.065 Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load #21 2.065 Execution halted #21 2.066 * removing ‘/root/R/x86_64-pc-linux-gnu-library/4.5/remotes’ #21 2.079 Error in install.packages("remotes") : #21 2.079 (converted from warning) installation of package ‘remotes’ had non-zero exit status #21 2.079 Execution halted ``` Which also makes me wonder if it's related to some of the BLAS / LAPACK changes in devel: https://github.com/wch/r-source/commit/6368a1529f448ab165bf6f9f83a44da59a6a0cc8 I'm curious if anyone else has run into the same issue? @krlmlr maybe you've also run into this?
关闭于 2025-03-10 3 条评论