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SRA tools fetching fails on AWS, fixable by updating sra-toolkit version

#364Openivirshup 创建于 2026-03-20
bug
I
ivirshupcommented
### Description of the bug Hey! When running this pipeline from AWS using the sratoolkit method, I was hitting the following error at the SRATOOLS_PREFETCH step: ``` Cannot parse AWS identity PKCS7 part, err=0 ( 500 ) ``` While debugging I came across this issue: https://github.com/ncbi/sra-tools/issues/829/ and the [release notes for sratools](https://github.com/ncbi/sra-tools/blob/master/CHANGES.md#sra-toolkit-3010) which suggested that updating the version of sra tools would fix the problem. Updating the docker image: ``` withName: 'CUSTOM_SRATOOLSNCBISETTINGS|SRATOOLS_PREFETCH { container = 'biocontainers/sra-tools:3.2.1--h4304569_1' } ``` plus doing a wave build for `SRATOOLS_FASTERQDUMP` (which also needs `pigz`) along with wave builds for arm support ended up solving the issue for me. It looks like the nf-core modules have already been updated, so I believe pulling in those updates + updating the image for the custom module would fix this. ### Command used and terminal output ```console ``` ### Relevant files _No response_ ### System information _No response_
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