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could not get image manifest oras://community.wave.seqera.io/library/polars_pyyaml_seaborn_upsetplot:f266bc0cdfb4cc77

#202Closedpnolabs 创建于 2025-05-22
bug
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pnolabscommented
### Description of the bug Dear all, I am trying to run the dev version of nf-core/circrna on a HPC but the pipeline gets stuck when trying to pull this image (oras://community.wave.seqera.io/library/polars_pyyaml_seaborn_upsetplot:f266bc0cdfb4cc77) with singularity (3.8.7-gcc-12.2.0-h4t6dps). I'll attach the .netflow.log file. ... Pulling Singularity image oras://community.wave.seqera.io/library/polars_pyyaml_seaborn_upsetplot:f266bc0cdfb4cc77 [cache /gpfs/data/fs72371/jfreun86/nxt_simg/community.wave.seqera.io-library-polars_pyyaml_seaborn_upsetplot-f266bc0cdfb4cc77.img] WARN: Process 'NFCORE_CIRCRNA:CIRCRNA:BSJ_DETECTION:FAIL_ON_EMPTY' cannot be executed by 'slurm' executor -- Using 'local' executor instead ERROR ~ Error executing process > 'NFCORE_CIRCRNA:CIRCRNA:BSJ_DETECTION:COMBINEBEDS_READS (7)' Caused by: Failed to pull singularity image command: singularity pull --name community.wave.seqera.io-library-polars_pyyaml_seaborn_upsetplot-f266bc0cdfb4cc77.img.pulling.1747903662491 oras://community.wave.seqera.io/library/polars_pyyaml_seaborn_upsetplot:f266bc0cdfb4cc77 > /dev/null status : 255 hint : Try and increase singularity.pullTimeout in the config (current is "2h") message: FATAL: While pulling image from oci registry: error fetching image to cache: failed to get checksum for oras://community.wave.seqera.io/library/polars_pyyaml_seaborn_upsetplot:f266bc0cdfb4cc77: could not get image manifest, received mediaType: application/vnd.docker.distribution.manifest.v2+json I already increased the pullTimeout from "1h" to "2h" but when resuming the pipeline it immedeatly stops again. Also I cannot seem to find this container on the website (https://seqera.io/containers/). Does it still exist? Can you point me in the right direction on how to solve/work around this issue? Thank you very much for your time and expertise! [nextflow.log](https://github.com/user-attachments/files/20396988/nextflow.log) ### Command used and terminal output ```console # Run nextflow pipeline with test profile nextflow run nf-core/circrna -r dev \ -profile singularity \ -resume \ -c /gpfs/data/.../scripts/circRNA/nxt.config \ -params-file /gpfs/data/.../scripts/circRNA/params.yml \ --input /gpfs/data/.../01_data/circRNA/samplesheet.csv \ --outdir /gpfs/data/.../02_analysis/circRNA/output \ --phenotype /gpfs/data/.../01_data/circRNA/phenotype.csv ``` ### Relevant files _No response_ ### System information System information Nextflow version 24.10.3 Hardware HPC Executor slurm Container engine: Singularity 3.8.7 OS AlmaLinux release 8.8 (Sapphire Caracal) Version of nf-core/circrna (dev)
关闭于 2025-05-23 3 条评论