ITADN

"RuntimeError: ConnectionPool is closed" when registration

#47Openazzhu 创建于 2023-11-27
bug
A
azzhucommented
## Bug report ## Description of the problem Data information: total 16 tiles the dimensions of each tile is [1920,1920,1099] datatype:uint16 the pixel resolution is [0.23,0.23,0.42] sum size of two rounds is about 1T each round has four channels "c0,c1,c2,c3" the dapi channel is "c0" When I skipped other modules and just run registration, an error had occurred: ## Log file(s) ![1](https://github.com/JaneliaSciComp/multifish/assets/17442325/6c748024-6f99-45bb-afd1-ef411635b61f) ![2](https://github.com/JaneliaSciComp/multifish/assets/17442325/b2151004-db15-402d-bbe9-7b4887900264) ![3](https://github.com/JaneliaSciComp/multifish/assets/17442325/87245f2e-5d44-49cf-bc8d-d28d429029e2) ![4](https://github.com/JaneliaSciComp/multifish/assets/17442325/63099667-aa19-4006-b6b3-3dd088b1c0e3) ### Environment * EASI-FISH Pipeline version: [dev] * Nextflow version: [23.04.1] * Container runtime: [Singularity] * Platform: [Slurm] * Operating system: [CentOS 7.6] ### Additional context (Add any other context about the problem here)
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