ITADN

Is an updated ORF1ab Nextclade dataset available?

#1705Closedryhisner 创建于 2025-11-10
t:ask
R
ryhisnercommented
I previously thought the dataset I was using to create Nextclade ndjson files automatically updated, but then I realized it registered zero XEC sequences (though it registered KP.3.1.1 and various MC lineages). So I updated the dataset, but found that all the Julia functions I've written to analyze these ndjsons—I've written hundreds of them, some thousands of lines long—no longer work. The problem seems to be that the new dataset puts everything in NSP form instead of ORF1ab form. Is it possible to get an updated dataset that uses ORF1ab instead of NSPs? If not, I'm going to have to rewrite all the functions I've made, which will probably take weeks of painstaking and mind-numbing work. I have functions that convert ORF1a and ORF1b to NSP form and vice versa, but this doesn't help with analyzing the original ndjson function.
关闭于 2025-11-10 4 条评论