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NFCORE_MAG:MAG:BUSCO_QC:BUSCO_SUMMARY terminated with an error exit status (1)

#968Openmglgc 创建于 2026-01-26
bug
M
mglgccommented
### Description of the bug First of all, I'd llike to thank you for the free availability of your pipeline development. I'm setting the --skip_clipping and --skip_adapter_trimming options because using previously cleaning short reads. Please, could you point me in the right direction to fix the reported error? Thank you very much in advance.m i ### Command used and terminal output ```console nextflow run nf-core/mag -profile docker --input samples.csv --skip_megahit --skip_clipping --skip_adapter_trimming --outdir mag_results After a successful starting, the running ends with the error messages you may find below: ERROR ~ Error executing process > 'NFCORE_MAG:MAG:BUSCO_QC:BUSCO_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:BUSCO_QC:BUSCO_SUMMARY` terminated with an error exit status (1) Command executed: summary_busco.py -a -o busco_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:BUSCO_QC:BUSCO_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: Either --summaries_domain, --summaries_specific or --failed_bins must be specified! ``` ### Relevant files _No response_ ### System information N E X T F L O W ~ version 25.10.2 Desktop. local. Docker. Ubuntu 24.04, 256 GB RAM. Launching `https://github.com/nf-core/mag` [mighty_watson] DSL2 - revision: a8e92af70e [master]
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