[ERRO] record on line 2: wrong number of fields

### Description of the bug I met this error in the end of the pipeline. ``` executor > local (101) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [89/60e2c0] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample13) [100%] 14 of 14, cached: 14 ✔ [b8/858baa] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample11) [100%] 14 of 14, cached: 14 ✔ [9b/1de517] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample09) [100%] 14 of 14, cached: 14 ✔ [5e/b3194e] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample14) [100%] 14 of 14, cached: 14 ✔ [8b/845ff4] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample12) [100%] 14 of 14, cached: 14 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [53/257ca8] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample11) [100%] 14 of 14, cached: 14 ✔ [1f/a8ca68] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample09) [100%] 14 of 14, cached: 14 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [f3/4542b7] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample09.contigs.fasta.gz) [100%] 28 of 28, cached: 28 ✔ [02/d2dc1f] NFCORE_MAG:MAG:QUAST (METAMDBG-sample11) [100%] 28 of 28, cached: 28 ✔ [c1/be9705] NFCORE_MAG:MAG:PRODIGAL (sample09) [100%] 28 of 28, cached: 28 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [e6/e6cfe0] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (23) [100%] 28 of 28, cached: 28 ✔ [f7/9b40fa] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample10) [100%] 392 of 392, cached: 392 ✔ [eb/9f9f0e] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample09) [100%] 28 of 28, cached: 28 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [57/c21414] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample06) [100%] 28 of 28, cached: 28 ✔ [9a/183805] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample14) [100%] 28 of 28, cached: 28 ✔ [40/9037f1] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample13) [100%] 28 of 28, cached: 28 ✔ [44/8a5eaf] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample11) [100%] 28 of 28, cached: 28 ✔ [07/e6f8e5] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample06) [100%] 28 of 28, cached: 28 ✔ [06/1db85a] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample11) [100%] 28 of 28, cached: 28 ✔ [6a/66ab6e] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample11) [100%] 28 of 28, cached: 28 ✔ [ba/fadbd1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample11) [100%] 28 of 28, cached: 28 ✔ [9e/553d6b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample06) [100%] 28 of 28, cached: 28 ✔ [a3/9f6321] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample06) [100%] 28 of 28, cached: 25, ignored: 3 ✔ [47/282bf1] NFCORE_MAG:MAG:BINNING:BINNING_METABINNER:METABINNER_KMER (sample09) [100%] 28 of 28, cached: 28 ✔ [1d/a6f86b] NFCORE_MAG:MAG:BINNING:BINNING_METABINNER:METABINNER_TOOSHORT (sample10) [100%] 28 of 28, cached: 28 ✔ [5b/583f19] NFCORE_MAG:MAG:BINNING:BINNING_METABINNER:METABINNER_METABINNER (sample09) [100%] 28 of 28, cached: 28 ✔ [e7/86d3f2] NFCORE_MAG:MAG:BINNING:BINNING_METABINNER:METABINNER_BINS (sample09) [100%] 28 of 28, cached: 28 ✔ [ce/293d80] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample13) [100%] 14 of 14, cached: 14 ✔ [8d/80c46e] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MetaBinner-sample09) [100%] 84 of 84, cached: 84 ✔ [d7/9fab19] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MetaBinner-sample13.4.fa.gz) [100%] 2073 of 2073, cached: 2073 ✔ [42/8d9062] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MetaBinner-sample09.unbinned.1.fa.gz) [100%] 1 of 1, cached: 1 ✔ [2c/cfc74d] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample13) [100%] 137 of 137, cached: 137 ✔ [36/fb4aa2] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT (FLYE-CONCOCT-sample13) [100%] 134 of 134, cached: 134 ✔ [1e/01d739] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [100%] 1 of 1, cached: 1 ✔ [20/32af9d] NFCORE_MAG:MAG:BIN_QC:BUSCO_BUSCO (FLYE-MetaBinner-sample13) [100%] 138 of 138, cached: 41, ignored: 35 ✔ [36/9c8fdb] NFCORE_MAG:MAG:BIN_QC:CONCAT_BUSCO_TSV (busco) [ 0%] 0 of 1 ✘ [de/17fcb7] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MetaBinner-unclassified-unrefined-sample13) [100%] 138 of 138, cached: 138 ✔ [09/c5aa05] NFCORE_MAG:MAG:QUAST_BINS_SUMMARY [100%] 1 of 1, cached: 1 ✔ [42/5e8482] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1, cached: 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [7c/b7898a] NFCORE_MAG:MAG:PROKKA (FLYE-MetaBinner-sample13.2) [100%] 2074 of 2074, cached: 2074 ✔ Plus 3 more processes waiting for tasks… Pulling Singularity image https://depot.galaxyproject.org/singularity/csvtk:0.31.0--h9ee0642_0 [cache /media/user/Petros/mag/work/singularity/depot.galaxyproject.org-singularity-csvtk-0.31.0--h9ee0642_0.img] Execution cancelled -- Finishing pending tasks before exit -[nf-core/mag] Pipeline completed with errors- WARN: Singularity cache directory has not been defined -- Remote image will be stored in the path: /media/user/Petros/mag/work/singularity -- Use the environment variable NXF_SINGULARITY_CACHEDIR to specify a different location ERROR ~ Error executing process > 'NFCORE_MAG:MAG:BIN_QC:CONCAT_BUSCO_TSV (busco)' Caused by: Process `NFCORE_MAG:MAG:BIN_QC:CONCAT_BUSCO_TSV (busco)` terminated with an error exit status (255) Command executed: csvtk \ concat \ \ --num-cpus 2 \ --delimiter " " \ --out-delimiter " " \ --out-file busco_summary.tsv \ inputs/csv1/sample01-auto-busco.batch_summary.txt inputs/csv2/sample08-auto-busco.batch_summary.txt inputs/csv3/sample08-auto-busco.batch_summary.txt inputs/csv4/sample08-auto-busco.batch_summary.txt inputs/csv5/sample08-auto-busco.batch_summary.txt inputs/csv6/sample08-auto-busco.batch_summary.txt inputs/csv7/sample08-auto-busco.batch_summary.txt inputs/csv8/sample03-auto-busco.batch_summary.txt inputs/csv9/sample08-auto-busco.batch_summary.txt inputs/csv10/sample02-auto-busco.batch_summary.txt inputs/csv11/sample02-auto-busco.batch_summary.txt inputs/csv12/sample02-auto-busco.batch_summary.txt inputs/csv13/sample02-auto-busco.batch_summary.txt inputs/csv14/sample02-auto-busco.batch_summary.txt inputs/csv15/sample02-auto-busco.batch_summary.txt inputs/csv16/sample02-auto-busco.batch_summary.txt inputs/csv17/sample02-auto-busco.batch_summary.txt inputs/csv18/sample04-auto-busco.batch_summary.txt inputs/csv19/sample04-auto-busco.batch_summary.txt inputs/csv20/sample05-auto-busco.batch_summary.txt inputs/csv21/sample12-auto-busco.batch_summary.txt inputs/csv22/sample12-auto-busco.batch_summary.txt inputs/csv23/sample12-auto-busco.batch_summary.txt inputs/csv24/sample12-auto-busco.batch_summary.txt inputs/csv25/sample12-auto-busco.batch_summary.txt inputs/csv26/sample06-auto-busco.batch_summary.txt inputs/csv27/sample06-auto-busco.batch_summary.txt inputs/csv28/sample06-auto-busco.batch_summary.txt inputs/csv29/sample06-auto-busco.batch_summary.txt inputs/csv30/sample06-auto-busco.batch_summary.txt inputs/csv31/sample06-auto-busco.batch_summary.txt inputs/csv32/sample06-auto-busco.batch_summary.txt inputs/csv33/sample14-auto-busco.batch_summary.txt inputs/csv34/sample09-auto-busco.batch_summary.txt inputs/csv35/sample11-auto-busco.batch_summary.txt inputs/csv36/sample09-auto-busco.batch_summary.txt inputs/csv37/sample14-auto-busco.batch_summary.txt inputs/csv38/sample09-auto-busco.batch_summary.txt inputs/csv39/sample13-auto-busco.batch_summary.txt inputs/csv40/sample11-auto-busco.batch_summary.txt inputs/csv41/sample13-auto-busco.batch_summary.txt inputs/csv42/sample09-auto-busco.batch_summary.txt inputs/csv43/sample01-auto-busco.batch_summary.txt inputs/csv44/sample01-auto-busco.batch_summary.txt inputs/csv45/sample01-auto-busco.batch_summary.txt inputs/csv46/sample01-auto-busco.batch_summary.txt inputs/csv47/sample01-auto-busco.batch_summary.txt inputs/csv48/sample01-auto-busco.batch_summary.txt inputs/csv49/sample03-auto-busco.batch_summary.txt inputs/csv50/sample03-auto-busco.batch_summary.txt inputs/csv51/sample03-auto-busco.batch_summary.txt inputs/csv52/sample03-auto-busco.batch_summary.txt inputs/csv53/sample03-auto-busco.batch_summary.txt inputs/csv54/sample03-auto-busco.batch_summary.txt inputs/csv55/sample07-auto-busco.batch_summary.txt inputs/csv56/sample03-auto-busco.batch_summary.txt inputs/csv57/sample07-auto-busco.batch_summary.txt inputs/csv58/sample07-auto-busco.batch_summary.txt inputs/csv59/sample07-auto-busco.batch_summary.txt inputs/csv60/sample07-auto-busco.batch_summary.txt inputs/csv61/sample07-auto-busco.batch_summary.txt inputs/csv62/sample07-auto-busco.batch_summary.txt inputs/csv63/sample07-auto-busco.batch_summary.txt inputs/csv64/sample04-auto-busco.batch_summary.txt inputs/csv65/sample04-auto-busco.batch_summary.txt inputs/csv66/sample04-auto-busco.batch_summary.txt inputs/csv67/sample05-auto-busco.batch_summary.txt inputs/csv68/sample05-auto-busco.batch_summary.txt inputs/csv69/sample05-auto-busco.batch_summary.txt inputs/csv70/sample05-auto-busco.batch_summary.txt inputs/csv71/sample05-auto-busco.batch_summary.txt inputs/csv72/sample12-auto-busco.batch_summary.txt inputs/csv73/sample12-auto-busco.batch_summary.txt inputs/csv74/sample12-auto-busco.batch_summary.txt inputs/csv75/sample10-auto-busco.batch_summary.txt inputs/csv76/sample10-auto-busco.batch_summary.txt inputs/csv77/sample10-auto-busco.batch_summary.txt inputs/csv78/sample10-auto-busco.batch_summary.txt inputs/csv79/sample10-auto-busco.batch_summary.txt inputs/csv80/sample10-auto-busco.batch_summary.txt inputs/csv81/sample10-auto-busco.batch_summary.txt inputs/csv82/sample10-auto-busco.batch_summary.txt inputs/csv83/sample10-auto-busco.batch_summary.txt inputs/csv84/sample14-auto-busco.batch_summary.txt inputs/csv85/sample14-auto-busco.batch_summary.txt inputs/csv86/sample14-auto-busco.batch_summary.txt inputs/csv87/sample14-auto-busco.batch_summary.txt inputs/csv88/sample14-auto-busco.batch_summary.txt inputs/csv89/sample14-auto-busco.batch_summary.txt inputs/csv90/sample09-auto-busco.batch_summary.txt inputs/csv91/sample09-auto-busco.batch_summary.txt inputs/csv92/sample09-auto-busco.batch_summary.txt inputs/csv93/sample09-auto-busco.batch_summary.txt inputs/csv94/sample11-auto-busco.batch_summary.txt inputs/csv95/sample11-auto-busco.batch_summary.txt inputs/csv96/sample11-auto-busco.batch_summary.txt inputs/csv97/sample11-auto-busco.batch_summary.txt inputs/csv98/sample11-auto-busco.batch_summary.txt inputs/csv99/sample11-auto-busco.batch_summary.txt inputs/csv100/sample13-auto-busco.batch_summary.txt inputs/csv101/sample13-auto-busco.batch_summary.txt inputs/csv102/sample13-auto-busco.batch_summary.txt inputs/csv103/sample13-auto-busco.batch_summary.txt cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:BIN_QC:CONCAT_BUSCO_TSV": csvtk: $(echo $( csvtk version | sed -e "s/csvtk v//g" )) END_VERSIONS Command exit status: 255 Command output: (empty) Command error: [ERRO] record on line 2: wrong number of fields Work dir: /media/user/Petros/mag/work/36/9c8fdb86dd157ce35965539b465b4b Container: /media/user/Petros/mag/work/singularity/depot.galaxyproject.org-singularity-csvtk-0.31.0--h9ee0642_0.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details ``` ### Command used and terminal output ```console ``` ### Relevant files _No response_ ### System information _No response_