.DS_Store
11_multiqc/multiqc_data/multiqc.parquet
11_multiqc/multiqc_data/multiqc.log
11_multiqc/multiqc_data/multiqc_data.json
11_multiqc/multiqc_data/multiqc_sources.txt
11_multiqc/multiqc_data/multiqc_software_versions.txt
11_multiqc/multiqc_data/llms-full.txt
11_multiqc/multiqc_plots/{svg,pdf,png}/*.{svg,pdf,png}
11_multiqc/multiqc_report.html
pipeline_info/*.{html,json,txt,yml}
04_celltypes/singler/**
**/llms-full.txt

**/*.{png,pt,h5ad,rds}
09_finalized/merged_metadata.csv
**/multiqc_sizes.txt
**/sizes.tsv
**/base_metadata.csv
06_per_group/**

03_combine/integrate/scib_metrics/**
**/multiqc_scib_metrics_benchmark.txt

10_reports/*.html
