name: "doubletdetection"
description: Doublet detection in single-cell RNA-seq data
keywords:
  - single-cell
  - doublets
  - doublet_detection
tools:
  - "doubletdetection":
      description: "Doublet detection in single-cell RNA-seq data"
      tool_dev_url: "https://github.com/JonathanShor/DoubletDetection"
      doi: "10.5281/zenodo.6349517"
      licence:
        - "MIT"
      identifier: biotools:DoubletDetection
input:
  - - meta:
        type: map
        description: |
          Groovy Map containing sample information
          e.g. `[ id:'sample1', single_end:false ]`
    - h5ad:
        type: file
        description: H5AD anndata object
        pattern: "*.h5ad"
        ontologies: []
output:
  h5ad:
    - - meta:
          type: map
          description: |
            Groovy Map containing sample information
            e.g. `[ id:'sample1', single_end:false ]`
      - "*.h5ad":
          type: file
          description: H5AD anndata object
          pattern: "*.h5ad"
          ontologies: []
  predictions:
    - - meta:
          type: map
          description: |
            Groovy Map containing sample information
            e.g. `[ id:'sample1', single_end:false ]`
      - "*.pkl":
          type: file
          description: pandas dataframe containing the doublet classification
          pattern: "*.pkl"
          ontologies: []
  versions:
    - versions.yml:
        type: file
        description: File containing software versions
        pattern: "versions.yml"
        ontologies:
          - edam: http://edamontology.org/format_3750 # YAML
topics:
  versions:
    - versions.yml:
        type: file
        description: File containing software versions
        pattern: "versions.yml"
        ontologies:
          - edam: http://edamontology.org/format_3750 # YAML
authors:
  - "@LeonHafner"
maintainers:
  - "@LeonHafner"
