{
    "name": "nf-core/scdownstream",
    "homePage": "https://github.com/nf-core/scdownstream",
    "repos": {
        "https://github.com/nf-core/modules.git": {
            "modules": {
                "nf-core": {
                    "anndata/barcodes": {
                        "branch": "master",
                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
                        "installed_by": ["h5ad_removebackground_barcodes_cellbender_anndata"]
                    },
                    "cellbender/merge": {
                        "branch": "master",
                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/cellbender/merge/cellbender-merge.diff"
                    },
                    "cellbender/removebackground": {
                        "branch": "master",
                        "git_sha": "8c000e7fa8559bfa67da381c29714aa2b9a3b77a",
                        "installed_by": ["h5ad_removebackground_barcodes_cellbender_anndata"],
                        "patch": "modules/nf-core/cellbender/removebackground/cellbender-removebackground.diff"
                    },
                    "doubletdetection": {
                        "branch": "master",
                        "git_sha": "fcf2d1ae0a45af93c0ca5010a48ff257aa8340d3",
                        "installed_by": ["modules"]
                    },
                    "multiqc": {
                        "branch": "master",
                        "git_sha": "cd0ad387832473916b1f1c80c2ca673a7883bf94",
                        "installed_by": ["modules"]
                    },
                    "quartonotebook": {
                        "branch": "master",
                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
                        "installed_by": ["modules"]
                    },
                    "scanpy/scrublet": {
                        "branch": "master",
                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/scanpy/scrublet/scanpy-scrublet.diff"
                    },
                    "scvitools/scar": {
                        "branch": "master",
                        "git_sha": "4b801f99cf081cfbc00d202272385817636e6dfd",
                        "installed_by": ["modules"]
                    },
                    "scvitools/solo": {
                        "branch": "master",
                        "git_sha": "4b801f99cf081cfbc00d202272385817636e6dfd",
                        "installed_by": ["modules"]
                    },
                    "untar": {
                        "branch": "master",
                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
                        "installed_by": ["modules"]
                    }
                }
            },
            "subworkflows": {
                "nf-core": {
                    "h5ad_removebackground_barcodes_cellbender_anndata": {
                        "branch": "master",
                        "git_sha": "b7d92b962382d64514f6c5ec6901078d90cc5a44",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nextflow_pipeline": {
                        "branch": "master",
                        "git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nfcore_pipeline": {
                        "branch": "master",
                        "git_sha": "a3fb7351b1fdb2b1de282b765816bbea190e86a8",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nfschema_plugin": {
                        "branch": "master",
                        "git_sha": "fdc08b8b1ae74f56686ce21f7ea11ad11990ce57",
                        "installed_by": ["subworkflows"]
                    }
                }
            }
        }
    }
}
