# pipeline output #
ingest/benchmarks
ingest/data
ingest/logs
ingest/results
nextclade/auspice
nextclade/benchmarks
nextclade/data
nextclade/dataset
nextclade/logs
nextclade/results
nextclade/test_output
phylogenetic/auspice
phylogenetic/benchmarks
phylogenetic/data
phylogenetic/logs
phylogenetic/results


# Snakemake state dir #
.snakemake
snakemake_log


# For Python #
*.pyc
.tox/
.cache/
__pycache__/*


# OS generated files #
.DS_Store
._*
.Spotlight-V100
.Trashes
Icon?
ehthumbs.db
Thumbs.db
*~

# local emacs config
.dir-locals.el
