# D4D Agent Processing Report

Generated: 2025-11-08 19:12:13

## Summary

- **Files processed**: 16
- **Errors**: 44
- **Skipped**: 13

## Results by Column

### AI_READI

#### Successfully Processed

- ✅ `fairhub_dataset_2_tab_access_row11.html` → `fairhub_dataset_2_tab_access_d4d.yaml`
- ✅ `fairhub_dataset_2_row11.html` → `fairhub_dataset_2_d4d.yaml`
- ✅ `zenodo_org_records-10642459_row10.html` → `zenodo_org_records-10642459_d4d.yaml`

#### Errors

- ❌ `google_doc_1rJsa5kySlBRRNhsO_WY7N3bfSKtqDi-Q_row12.pdf`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 4, column 22:
    description: PDF file: google_doc_1rJsa5kySlBRRNhsO_W ... 
                         ^

#### Skipped

- ⏭️  `fairhub_dataset_2_row11.txt`: Already exists
- ⏭️  `fairhub_dataset_2_tab_access_row11.txt`: Already exists
- ⏭️  `fairhub_dataset_2_tab_access_row15.txt`: Already exists
- ⏭️  `fairhub_dataset_2_row15.txt`: Already exists
- ⏭️  `fairhub_dataset_2_row15.html`: Already exists
- ⏭️  `fairhub_dataset_2_tab_access_row15.html`: Already exists
- ⏭️  `zenodo_org_records-10642459_row10.txt`: Already exists

### CHORUS

#### Successfully Processed

- ✅ `aim-ahead-bridge2ai-for-clinical-care-informational-webinar_row8.pdf` → `aim-ahead-bridge2ai-for-clinical-care-informational-webinar_d4d.yaml`

### CM4AI

#### Successfully Processed

- ✅ `dataverse_10.18130_V3_B35XWX_tab_versions_row15.html` → `dataverse_10.18130_V3_B35XWX_tab_versions_d4d.yaml`
- ✅ `dataverse_10.18130_V3_B35XWX_tab_metadata_row15.txt` → `dataverse_10.18130_V3_B35XWX_tab_metadata_d4d.yaml`
- ✅ `dataverse_10.18130_V3_F3TD5R_tab_files_row18.html` → `dataverse_10.18130_V3_F3TD5R_tab_files_d4d.yaml`
- ✅ `dataverse_10.18130_V3_B35XWX_tab_files_row15.txt` → `dataverse_10.18130_V3_B35XWX_tab_files_d4d.yaml`
- ✅ `dataverse_10.18130_V3_F3TD5R_row18.html` → `dataverse_10.18130_V3_F3TD5R_d4d.yaml`
- ✅ `creativecommons_org_licenses-by-nc-sa_row14.html` → `creativecommons_org_licenses-by-nc-sa_d4d.yaml`
- ✅ `dataverse_10.18130_V3_B35XWX_tab_terms_row15.html` → `dataverse_10.18130_V3_B35XWX_tab_terms_d4d.yaml`
- ✅ `dataverse_10.18130_V3_F3TD5R_tab_terms_row18.html` → `dataverse_10.18130_V3_F3TD5R_tab_terms_d4d.yaml`
- ✅ `dataverse_10.18130_V3_B35XWX_row15.html` → `dataverse_10.18130_V3_B35XWX_d4d.yaml`

#### Errors

- ❌ `dataverse_10.18130_V3_F3TD5R_tab_versions_row18.txt`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 142, column 416:
     ... Maps for Artificial Intelligence: AI-Ready Maps of Human Cell Ar ... 
                                         ^
- ❌ `dataverse_10.18130_V3_F3TD5R_tab_metadata_row18.txt`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 111, column 68:
     ... opy ICC-IF images (multi-channel: DAPI, calreticulin/ER, tubulin ... 
                                         ^
- ❌ `biorxiv_2024.05.21.589311v1_row4.pdf`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 4, column 22:
    description: PDF file: biorxiv_2024.05.21.589311v1_ro ... 
                         ^
- ❌ `dataverse_10.18130_V3_F3TD5R_tab_versions_row18.html`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 151, column 54:
     ... jects: No; De-identified Samples: Yes; FDA Regulated: No
                                         ^
- ❌ `dataverse_10.18130_V3_B35XWX_row15.txt`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 156, column 490:
     ... e-Relevant Cell Lines. 2024. doi: http://doi.org/10.1101/2024.05 ... 
                                         ^
- ❌ `dataverse_10.18130_V3_F3TD5R_tab_metadata_row18.html`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 143, column 48:
     ... jects: No; De-identified Samples: Yes.
                                         ^
- ❌ `dataverse_10.18130_V3_B35XWX_tab_terms_row15.txt`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 162, column 194:
     ... e-Relevant Cell Lines. 2024. doi: http://doi.org/10.1101/2024.05 ... 
                                         ^
- ❌ `dataverse_10.18130_V3_F3TD5R_tab_terms_row18.txt`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 181, column 490:
     ... e-Relevant Cell Lines. 2024. doi: http://doi.org/10.1101/2024.05 ... 
                                         ^

#### Skipped

- ⏭️  `dataverse_10.18130_V3_B35XWX_tab_versions_row15.txt`: Already exists
- ⏭️  `dataverse_10.18130_V3_B35XWX_tab_files_row15.html`: Already exists
- ⏭️  `dataverse_10.18130_V3_F3TD5R_tab_files_row18.txt`: Already exists
- ⏭️  `dataverse_10.18130_V3_F3TD5R_row18.txt`: Already exists
- ⏭️  `creativecommons_org_licenses-by-nc-sa_row14.txt`: Already exists
- ⏭️  `dataverse_10.18130_V3_B35XWX_tab_metadata_row15.html`: Already exists

### VOICE

#### Successfully Processed

- ✅ `healthnexus_tab_conflicts-of-interest_row15.html` → `healthnexus_tab_conflicts-of-interest_d4d.yaml`
- ✅ `google_doc_row12.html` → `google_doc_d4d.yaml`
- ✅ `drive_google_com_B2AI_Voice_DTUA_row13.pdf` → `drive_google_com_B2AI_Voice_DTUA_d4d.yaml`

#### Errors

- ❌ `healthnexus_tab_acknowledgements_row15.txt`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_files_row15.txt`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_2_row15.html`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 1, column 20:
    id: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                       ^
- ❌ `healthnexus_tab_background_row15.html`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 2, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_description_row15.txt`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_background_row15.txt`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_documentation_row15.html`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 2, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_row15.html`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 2, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_methods_row15.html`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 2, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_release-notes_row15.txt`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_documentation_row15.txt`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_usage-notes_row15.html`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 2, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_conflicts-of-interest_row15.txt`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_release-notes_row15.html`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_references_row15.html`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 2, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_metadata_row15.html`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 1, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_methods_row15.txt`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_abstract_row15.txt`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `physionet_b2ai-voice_1.1_row16.txt`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_versions_row15.html`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `physionet_b2ai-voice_1.1_row16.html`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 2, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_ethics_row15.html`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_acknowledgements_row15.html`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_metadata_row15.txt`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_usage-notes_row15.txt`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_files_row15.html`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_ethics_row15.txt`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_description_row15.html`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 2, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_row15.txt`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_references_row15.txt`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_versions_row15.txt`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_abstract_row15.html`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_citationModal_row15.txt`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_citationModal_row15.html`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^
- ❌ `healthnexus_tab_2_row15.txt`: Invalid YAML generated: mapping values are not allowed here
  in "<unicode string>", line 3, column 23:
    title: Bridge2AI-Voice: An ethically-sourced, diverse  ... 
                          ^

