# dataverse 10.18130 V3 B35XWX tab files d4d

Datasheet for Dataset - Human Readable Format

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## Collection Process

How was the data acquired?

ID *
https://doi.org/10.18130/V3/B35XWX
Name
Cell Maps for Artificial Intelligence - March 2025 Data Release (Beta)
Title
Cell Maps for Artificial Intelligence - March 2025 Data Release (Beta)
Description
This dataset is the March 2025 Data Release of Cell Maps for Artificial Intelligence (CM4AI; CM4AI.org), the Functional Genomics Grand Challenge in the NIH Bridge2AI program. This Beta release includes perturb-seq data in undifferentiated KOLF2.1J iPSCs; SEC-MS data in undifferentiated KOLF2.1J iPSCs and iPSC-derived NPCs, neurons, and cardiomyocytes; and IF images in MDA-MB-468 breast cancer cells in the presence and absence of chemotherapy (vorinostat and paclitaxel). CM4AI output data are packaged with provenance graphs and rich metadata as AI-ready datasets in RO-Crate format using the FAIRSCAPE framework. Data presented here will be augmented regularly through the end of the project. CM4AI is a collaboration of UCSD, UCSF, Stanford, UVA, Yale, UA Birmingham, Simon Fraser University, and the Hastings Center. This data is Copyright (c) 2025 The Regents of the University of California except where otherwise noted. Spatial proteomics raw image data is copyright (c) 2025 The Board of Trustees of the Leland Stanford Junior University. Dataset licensed for reuse under Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International license (https://creativecommons.org/licenses/by-nc-sa/4.0/). Attribution is required to the copyright holders and the authors. Any publications referencing this data or derived products should cite the Related Publication below, as well as directly citing this data collection (2025-03-04). (2025-03-07)
Page
https://doi.org/10.18130/V3/B35XWX
Keywords

- Medicine, Health and Life Sciences
- AI
- affinity purification
- AP-MS
- artificial intelligence
- breast cancer
- Bridge2AI
- cardiomyocyte
- CM4AI
- CRISPR/Cas9
- induced pluripotent stem cell
- iPSC
- KOLF2.1J
- machine learning
- mass spectroscopy
- MDA-MB-468
- neural progenitor cell
- NPC
- neuron
- paclitaxel
- perturb-seq
- perturbation sequencing
- protein-protein interaction
- protein localization
- single-cell RNA sequencing
- scRNAseq
- SEC-MS
- size exclusion chromatography
- subcellular imaging
- vorinostat

Created By

- Clark T
- Parker J
- Al Manir S
- Axelsson U
- Ballllosero Navarro F
- Chinn B
- Churas CP
- Dailamy A
- Doctor Y
- Fall J
- Forget A
- Gao J
- Hansen JN
- Hu M
- Johannesson A
- Khaliq H
- Lee YH
- Lenkiewicz J
- Levinson MA
- Marquez C
- Metallo C
- Muralidharan M
- Nourreddine S
- Niestroy J
- Obernier K
- Pan E
- Polacco B
- Pratt D
- Qian G
- Schaffer L
- Sigaeva A
- Thaker S
- Zhang Y
- Bélisle-Pipon JC
- Brandt C
- Chen JY
- Ding Y
- Fodeh S
- Krogan N
- Lundberg E
- Mali P
- Payne-Foster P
- Ratcliffe S
- Ravitsky V
- Sali A
- Schulz W
- Ideker T

Resources

Role | Name | ORCID | Affiliation
--- | --- | --- | ---
Contributor | CRISPR Perturbation Cell Atlas ro-crate-metadata.json | - | -
Contributor | CRISPR Perturbation RNA Sequences - Raw Sequences ro-crate-metadata.json | - | -
Contributor | cm4ai-v0.6-beta-if-images-paclitaxel.zip | - | -
Contributor | cm4ai-v0.6-beta-if-images-untreated.zip | - | -

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## Distribution

How will the dataset be distributed?

DOI
doi:10.18130/V3/B35XWX
License
https://creativecommons.org/licenses/by-nc-sa/4.0/
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## Maintenance

How will the dataset be maintained?

Version
1.4
Generated on 2025-11-09 10:17:35 using Bridge2AI Data Sheets Schema