SEC-MS of MDA-MB468 following treatment of vorinostat or paclitaxel.

Version 1.5 DOI ↗ License ↗

RO-Crate Summary

ROCrate ID
DOI
Description
This dataset was generated by size exclusion chromatography-mass spectroscopy (SEC-MS) following the treatment of vorinostat or paclitaxel on MDA-MB468 human breast cancer cells, in the Nevan Krogan laboratory at the University of California San Francisco, as part of the Cell Maps for Artificial Intelligence (CM4AI; CM4AI.org) Functional Genomics Grand Challenge, a component of the U.S. National Institute of Health's (NIH) Bridge2AI program.
Authors
Forget A, Obernier K, Krogan N
Publisher
MassIVE
Principal Investigator
Trey Ideker
Contact Email
nevan.krogan@ucsf.edu
License
Confidentiality Level
Unrestricted
Keywords
AI, Artificial intelligence, Breast cancer, Cell maps, CM4AI, IPSC, KOLF2.1J, Machine learning, Mass spectroscopy, Protein-protein interaction, SEC-MS, vorinostat, paclitaxel
Citation
Clark T; Parker J; Al Manir S; Axelsson U; Ballllosero Navarro F; Chinn B; Churas CP; Dailamy A; Doctor Y; Fall J; Forget A; Gao J; Hansen JN; Hu M; Johannesson A; Khaliq H; Lee YH; Lenkiewicz J; Levinson MA; Marquez C; Metallo C; Muralidharan M; Nourreddine S; Niestroy J; Obernier K; Pan E; Polacco B; Pratt D; Qian G; Schaffer L; Sigaeva A; Thaker S; Zhang Y; Bélisle-Pipon JC; Brandt C; Chen JY; Ding Y; Fodeh S; Krogan N; Lundberg E; Mali P; Payne-Foster P; Ratcliffe S; Ravitsky V; Sali A; Schulz W; Ideker T, 2025, "Cell Maps for Artificial Intelligence - March 2025 Data Release (Beta)", https://doi.org/10.18130/V3/B35XWX , https://dataverse.lib.virginia.edu/, V1
Related Publications
Datasets 18
Software 1
Computations 9
Samples 1
Experiments 9
Instruments 1
Schemas 9
Name Description Access Release Date
Control Experiment 1: SEC-MS Raw Data (.d group) Group of raw SEC-MS data (.d format) for MDA-MB468 cells, control experiment 1. Each SEC-MS set is c... Access / Download 6/23/2025
Control Experiment 2: SEC-MS Raw Data (.d group) Group of raw SEC-MS data (.d format) for MDA-MB468 cells, control experiment 2. Each SEC-MS set is c... Access / Download 6/23/2025
Control Experiment 4: SEC-MS Raw Data (.d group) Group of raw SEC-MS data (.d format) for MDA-MB468 cells, control experiment 4. Each SEC-MS set is c... Access / Download 6/23/2025
Paclitaxel Experiment 1: SEC-MS Raw Data (.d group) Group of raw SEC-MS data (.d format) for MDA-MB468 cells, paclitaxel experiment 1. Each SEC-MS set i... Access / Download 6/23/2025
Paclitaxel Experiment 2: SEC-MS Raw Data (.d group) Group of raw SEC-MS data (.d format) for MDA-MB468 cells, paclitaxel experiment 2. Each SEC-MS set i... Access / Download 6/23/2025
Paclitaxel Experiment 3: SEC-MS Raw Data (.d group) Group of raw SEC-MS data (.d format) for MDA-MB468 cells, paclitaxel experiment 3. Each SEC-MS set i... Access / Download 6/23/2025
Vorinostat Experiment 1: SEC-MS Raw Data (.d group) Group of raw SEC-MS data (.d format) for MDA-MB468 cells, vorinostat experiment 1. Each SEC-MS set i... Access / Download 6/23/2025
Vorinostat Experiment 2: SEC-MS Raw Data (.d group) Group of raw SEC-MS data (.d format) for MDA-MB468 cells, vorinostat experiment 2. Each SEC-MS set i... Access / Download 6/23/2025
Vorinostat Experiment 3: SEC-MS Raw Data (.d group) Group of raw SEC-MS data (.d format) for MDA-MB468 cells, vorinostat experiment 3. Each SEC-MS set i... Access / Download 6/23/2025
Control Experiment 1: SEC-MS Processed Data (Report.tsv) Processed SEC-MS data (Report.tsv) for MDA-MB468 cells, control experiment 1. This data was generate... Access / Download 2025-06-23
Control Experiment 2: SEC-MS Processed Data (Report.tsv) Processed SEC-MS data (Report.tsv) for MDA-MB468 cells, control experiment 2. This data was generate... Access / Download 2025-06-23
Control Experiment 4: SEC-MS Processed Data (Report.tsv) Processed SEC-MS data (Report.tsv) for MDA-MB468 cells, control experiment 4. This data was generate... Access / Download 2025-06-23
Paclitaxel Experiment 1: SEC-MS Processed Data (Report.tsv) Processed SEC-MS data (Report.tsv) for MDA-MB468 cells, paclitaxel experiment 1. This data was gener... Access / Download 2025-06-23
Paclitaxel Experiment 2: SEC-MS Processed Data (Report.tsv) Processed SEC-MS data (Report.tsv) for MDA-MB468 cells, paclitaxel experiment 2. This data was gener... Access / Download 2025-06-23
Paclitaxel Experiment 3: SEC-MS Processed Data (Report.tsv) Processed SEC-MS data (Report.tsv) for MDA-MB468 cells, paclitaxel experiment 3. This data was gener... Access / Download 2025-06-23
Vorinostat Experiment 1: SEC-MS Processed Data (Report.tsv) Processed SEC-MS data (Report.tsv) for MDA-MB468 cells, vorinostat experiment 1. This data was gener... Access / Download 2025-06-23
Vorinostat Experiment 2: SEC-MS Processed Data (Report.tsv) Processed SEC-MS data (Report.tsv) for MDA-MB468 cells, vorinostat experiment 2. This data was gener... Access / Download 2025-06-23
Vorinostat Experiment 3: SEC-MS Processed Data (Report.tsv) Processed SEC-MS data (Report.tsv) for MDA-MB468 cells, vorinostat experiment 3. This data was gener... Access / Download 2025-06-23