Command-line interface
======================

.. toctree::
   :hidden:
   :includehidden:
   :titlesonly:

   init.rst
   status.rst
   track_curation.rst
   reorg.rst
   bidsify.rst
   process.rst
   track_processing.rst
   extract.rst
   pipeline.rst
   pipeline_search.rst
   pipeline_create.rst
   pipeline_install.rst
   pipeline_list.rst
   pipeline_validate.rst
   pipeline_upload.rst

.. note::
   This page only describes the top-level ``nipoppy`` command. See the sidebar for more information about specific sub-commands.

.. click:: nipoppy.cli.cli:cli
   :prog: nipoppy
