.DS_Store
bbduk/*.log
bbduk/*.fastq.gz
centrifuge/*/*.fastq.gz
centrifuge/*.txt
diamond/*/*.{tsv,log}
falco/*/*{_fastqc_data.txt,_report.html}
fastp/*.{html,zip,json,log}
fastqc/*_fastqc.{html,zip}
fastqc/*/*fastqc.zip
ganon/*/*.log
kaiju/*/*.{tsv,txt}
kraken2/**.{fastq.gz,txt}
krakenuniq/*/*.txt
krona/*.html
malt/*/*.rma6
malt/*/*.log
metaphlan/**.{biom,txt,sam}
motus/*/*.log
motus/*/*.out
motus/*.txt
multiqc/multiqc_data/*.txt
multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt
multiqc/multiqc_data/llms-full.txt
multiqc/multiqc_data/multiqc.log
multiqc/multiqc_data/multiqc.parquet
multiqc/multiqc_data/multiqc_data.json
multiqc/multiqc_data/multiqc_software_versions.txt
multiqc/multiqc_data/multiqc_sources.txt
multiqc/multiqc_plots/{svg,pdf,png}/*.{svg,pdf,png}
multiqc/multiqc_report.html
bbduk/*.log
centrifuge/*.{fastq.gz,txt}
diamond/*/*.{tsv,log}
fastp/*.{html,zip,json,log}
fastqc/*/*_fastqc.{html,zip}
ganon/*/*.log
kaiju/*/*.{tsv,txt}
kraken2/*/*.{fastq.gz,txt}
krona/*.html
nonpareil/*.{npa,npc,npl,npo,png,csv,json,pdf}
nonpareil/nonpareil_all_samples.tsv
pipeline_info/*.{html,json,txt,yml}
porechop_abi/*.log
sylph/*.tsv
taxpasta/*.tsv
