File	Total_Reads_1	Total_Reads_2	Not_Truncated_Reads_1	Not_Truncated_Reads_2	Truncated_Read_1	Truncated_Read_2	Average_Length_Truncated_1	Average_Length_Truncated_2	Too_Short_To_Map_Read_1	Too_Short_To_Map_Read_2	Unique_Alignments_Read_1	Unique_Alignments_Read_2	Multiple_Alignments_Read_1	Multiple_Alignments_Read_2	Failed_To_Align_Read_1	Failed_To_Align_Read_2	Paired_Read_1	Paired_Read_2	Valid_Pairs	Valid_Cis_Close	Valid_Cis_Far	Valid_Trans	Invalid_Pairs	Same_Circularised	Same_Dangling_Ends	Same_Fragment_Internal	Re_Ligation	Contiguous_Sequence	Wrong_Size	Deduplication_Read_Pairs_Uniques	Deduplication_Cis_Close_Uniques	Deduplication_Cis_Far_Uniques	Deduplication_Trans_Uniques	Percentage_Mapped	Percentage_Valid	Percentage_Uniques	Percentage_Unique_Trans	Percentage_Ditags_Passed_Through_HiCUP
test_dataset1_2.hicup.bam	99742	99742	92512	92628	7230	7114	22.45	22.63	2658	2476	3035	2924	10635	10940	83414	83402	670	670	202	20	182	0	468	9	36	286	23	1	113	202	20	182	0	0.67	30.15	100.00	0.00	0.20
