Type: Package
Package: teal.modules.hermes
Title: RNA-Seq Analysis Modules to Add to a Teal Application
Version: 0.2.0.9015
Date: 2026-02-09
Authors@R: c(
    person("Dony", "Unardi", , "unardid@gene.com", role = "cre"),
    person("Daniel", "Sabanés Bové", role = "aut"),
    person("Nikolas", "Burkoff", role = "aut"),
    person("Dinakar", "Kulkarni", role = "aut"),
    person("Konrad", "Pagacz", role = "aut"),
    person("Namrata", "Bhatia", role = "aut"),
    person("Dawid", "Kaledkowski", role = "aut"),
    person("Pawel", "Rucki", role = "aut"),
    person("Jeff", "Luong", role = "aut"),
    person("Stefanie", "Bienert", role = "aut"),
    person("Haocheng", "Li", role = "aut"),
    person("Lyndsee Midori", "Zhang", role = "aut"),
    person("Sorin", "Voicu", role = "ctb"),
    person("Benoit", "Falquet", role = "ctb"),
    person("Mahmoud", "Hallal", role = "ctb"),
    person("Tim", "Treis", role = "ctb"),
    person("Vedha", "Viyash", role = "ctb"),
    person("F. Hoffmann-La Roche AG", role = c("cph", "fnd"))
  )
Description: RNA-seq analysis teal modules based on the `hermes` package.
License: Apache License 2.0 | file LICENSE
URL: https://insightsengineering.github.io/teal.modules.hermes/,
    https://github.com/insightsengineering/teal.modules.hermes/
BugReports: 
    https://github.com/insightsengineering/teal.modules.hermes/issues
Depends:
    ggplot2 (>= 4.0.2),
    R (>= 4.1),
    shiny (>= 1.12.1),
    teal (>= 1.1.0)
Imports:
    bslib (>= 0.10.0),
    checkmate (>= 2.3.4),
    DT (>= 0.34),
    edgeR (>= 4.6.3),
    forcats (>= 1.0.1),
    hermes (>= 1.12.1),
    MultiAssayExperiment (>= 1.34.0),
    rtables (>= 0.6.15),
    S4Vectors (>= 0.46.0),
    shinyRadioMatrix (>= 0.2.1),
    shinyWidgets (>= 0.9.0),
    stats,
    stringr (>= 1.6.0),
    SummarizedExperiment (>= 1.38.1),
    teal.data (>= 0.8.0),
    teal.logger (>= 0.4.1),
    teal.reporter (>= 0.5.1),
    teal.widgets (>= 0.5.1),
    tern (>= 0.9.10),
    utils
Suggests:
    BiocStyle (>= 2.36.0),
    covr (>= 3.6.5),
    dplyr (>= 1.2.0),
    globals (>= 0.19),
    knitr (>= 1.51),
    logger (>= 0.4.1),
    matrixStats (>= 1.5.0),
    R6 (>= 2.6.1),
    rmarkdown (>= 2.30),
    rvest (>= 1.0.5),
    shinytest2 (>= 0.5.0),
    testthat (>= 3.3.2)
VignetteBuilder:
    knitr
biocViews:
Config/Needs/verdepcheck: tidyverse/ggplot2, rstudio/shiny,
    insightsengineering/teal, insightsengineering/teal.slice,
    insightsengineering/teal.code, insightsengineering/teal.transform,
    mllg/checkmate, bioc::edgeR, rstudio/DT, tidyverse/forcats,
    insightsengineering/hermes, bioc::MultiAssayExperiment,
    insightsengineering/rtables, bioc::S4Vectors,
    antonmalko/shinyRadioMatrix, dreamRs/shinyWidgets, tidyverse/stringr,
    bioc::SummarizedExperiment, insightsengineering/teal.data,
    insightsengineering/teal.logger, insightsengineering/teal.reporter,
    insightsengineering/teal.widgets, insightsengineering/tern,
    bioc::BiocStyle, r-lib/covr, tidyverse/dplyr, futureverse/globals,
    yihui/knitr, daroczig/logger, HenrikBengtsson/matrixStats, r-lib/R6,
    rstudio/rmarkdown, tidyverse/rvest, rstudio/shinytest2, r-lib/testthat
Config/Needs/website: insightsengineering/nesttemplate
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-US
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
