using OrdinaryDiffEqLowStorageRK
using Trixi

###############################################################################
# semidiscretization of the linear advection equation

advection_velocity = (0.2, -0.7, 0.5)
equations = LinearScalarAdvectionEquation3D(advection_velocity)

# Create DG solver with polynomial degree = 3 and (local) Lax-Friedrichs/Rusanov flux as surface flux
solver = DGSEM(polydeg = 3, surface_flux = flux_lax_friedrichs)

initial_condition = initial_condition_convergence_test

boundary_condition = BoundaryConditionDirichlet(initial_condition)
boundary_conditions = (; all = boundary_condition)

# Mapping as described in https://arxiv.org/abs/2012.12040 but with less warping.
# The mapping will be interpolated at tree level, and then refined without changing
# the geometry interpolant. The original mapping applied to this unstructured mesh
# causes some Jacobians to be negative, which makes the mesh invalid.
function mapping(xi, eta, zeta)
    # Don't transform input variables between -1 and 1 onto [0,3] to obtain curved boundaries
    # xi = 1.5 * xi_ + 1.5
    # eta = 1.5 * eta_ + 1.5
    # zeta = 1.5 * zeta_ + 1.5

    y = eta +
        1 / 6 * (cos(1.5 * pi * (2 * xi - 3) / 3) *
         cos(0.5 * pi * (2 * eta - 3) / 3) *
         cos(0.5 * pi * (2 * zeta - 3) / 3))

    x = xi +
        1 / 6 * (cos(0.5 * pi * (2 * xi - 3) / 3) *
         cos(2 * pi * (2 * y - 3) / 3) *
         cos(0.5 * pi * (2 * zeta - 3) / 3))

    z = zeta +
        1 / 6 * (cos(0.5 * pi * (2 * x - 3) / 3) *
         cos(pi * (2 * y - 3) / 3) *
         cos(0.5 * pi * (2 * zeta - 3) / 3))

    return SVector(x, y, z)
end

# Unstructured mesh with 68 cells of the cube domain [-1, 1]^3
mesh_file = Trixi.download("https://gist.githubusercontent.com/efaulhaber/d45c8ac1e248618885fa7cc31a50ab40/raw/37fba24890ab37cfa49c39eae98b44faf4502882/cube_unstructured_1.inp",
                           joinpath(@__DIR__, "cube_unstructured_1.inp"))

mesh = P4estMesh{3}(mesh_file, polydeg = 3,
                    mapping = mapping,
                    initial_refinement_level = 2)

# A semidiscretization collects data structures and functions for the spatial discretization
semi = SemidiscretizationHyperbolic(mesh, equations, initial_condition, solver;
                                    boundary_conditions = boundary_conditions)

###############################################################################
# ODE solvers, callbacks etc.

# Create ODE problem with time span from 0.0 to 0.1
ode = semidiscretize(semi, (0.0, 0.1))

# At the beginning of the main loop, the SummaryCallback prints a summary of the simulation setup
# and resets the timers
summary_callback = SummaryCallback()

# The AnalysisCallback allows to analyse the solution in regular intervals and prints the results
analysis_interval = 100
analysis_callback = AnalysisCallback(semi, interval = analysis_interval)

alive_callback = AliveCallback(analysis_interval = analysis_interval)

# The SaveRestartCallback allows to save a file from which a Trixi.jl simulation can be restarted
save_restart = SaveRestartCallback(interval = 100,
                                   save_final_restart = true)

# The SaveSolutionCallback allows to save the solution to a file in regular intervals
save_solution = SaveSolutionCallback(interval = 100,
                                     solution_variables = cons2prim)

# The StepsizeCallback handles the re-calculation of the maximum Δt after each time step
stepsize_callback = StepsizeCallback(cfl = 1.2)

# Create a CallbackSet to collect all callbacks such that they can be passed to the ODE solver
callbacks = CallbackSet(summary_callback, analysis_callback, alive_callback, save_restart,
                        save_solution, stepsize_callback)

###############################################################################
# run the simulation

# OrdinaryDiffEq's `solve` method evolves the solution in time and executes the passed callbacks
sol = solve(ode, CarpenterKennedy2N54(williamson_condition = false);
            dt = 1, # solve needs some value here but it will be overwritten by the stepsize_callback
            ode_default_options()..., callback = callbacks);
