LOCUS       NC_004296_REF               3402 bp ss-RNA     linear   VRL 13-AUG-2018
DEFINITION  Lassa virus segment S, complete sequence.
ACCESSION   NC_004296_REF
VERSION     NC_004296_REF.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Mammarenavirus lassaense
  ORGANISM  Mammarenavirus lassaense
            Viruses; Riboviria; Orthornavirae; Negarnaviricota;
            Polyploviricotina; Ellioviricetes; Bunyavirales; Arenaviridae;
            Mammarenavirus.
REFERENCE   1  (bases 1 to 3402)
  AUTHORS   Auperin,D.D. and McCormick,J.B.
  TITLE     Nucleotide sequence of the Lassa virus (Josiah strain) S genome RNA
            and amino acid sequence comparison of the N and GPC proteins to
            other arenaviruses
  JOURNAL   Virology 168 (2), 421-425 (1989)
   PUBMED   2916333
REFERENCE   2  (bases 1 to 3402)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (28-SEP-2002) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from J04324.
            Draft entry and computer-readable sequence for [1] kindly provided
            by D.Auperin, 09-DEC-1988.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3402
                     /organism="Mammarenavirus lassaense"
                     /mol_type="genomic RNA"
                     /strain="Josiah"
                     /db_xref="taxon:3052310"
                     /segment="S"
     repeat_region   1..19
                     /note="5' conserved complimentary terminus"
     gene            101..1810
                     /gene="NP"
                     /locus_tag="NP"
                     /db_xref="GeneID:956584"
     CDS             101..1810
                     /gene="NP"
                     /locus_tag="NP"
                     /codon_start=1
                     /product="nucleoprotein"
                     /protein_id="NP_694869.1"
                     /db_xref="GeneID:956584"
                     /translation="MSASKEIKSFLWTQSLRRELSGYCSNIKLQVVKDAQALLHGLDF
                     SEVSNVQRLMRKERRDDNDLKRLRDLNQAVNNLVELKSTQQKSILRVGTLTSDDLLIL
                     AADLEKLKSKVIRTERPLSAGVYMGNLSSQQLDQRRALLNMIGMSGGNQGARAGRDGV
                     VRVWDVKNAELLNNQFGTMPSLTLACLTKQGQVDLNDAVQALTDLGLIYTAKYPNTSD
                     LDRLTQSHPILNMIDTKKSSLNISGYNFSLGAAVKAGACMLDGGNMLETIKVSPQTMD
                     GILKSILKVKKALGMFISDTPGERNPYENILYKICLSGDGWPYIASRTSITGRAWENT
                     VVDLESDGKPQKADSNNSSKSLQSAGFTAGLTYSQLMTLKDAMLQLDPNAKTWMDIEG
                     RPEDPVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPGLTSAVI
                     DALPRNMVITCQGSDDIRKLLESQGRKDIKLIDIALSKTDSRKYENAVWDQYKDLCHM
                     HTGVVVEKKKRGGKEEITPHCALMDCIMFDAAVSGGLNTSVLRAVLPRDMVFRTSTPR
                     VVL"
     misc_feature    1817..1857
                     /note="hairpin intergenic region"
     gene            complement(1872..3347)
                     /gene="GPC"
                     /locus_tag="GPC"
                     /db_xref="GeneID:956585"
     CDS             complement(1872..3347)
                     /gene="GPC"
                     /locus_tag="GPC"
                     /codon_start=1
                     /product="glycoprotein"
                     /protein_id="NP_694870.1"
                     /db_xref="GeneID:956585"
                     /translation="MGQIVTFFQEVPHVIEEVMNIVLIALSVLAVLKGLYNFATCGLV
                     GLVTFLLLCGRSCTTSLYKGVYELQTLELNMETLNMTMPLSCTKNNSHHYIMVGNETG
                     LELTLTNTSIINHKFCNLSDAHKKNLYDHALMSIISTFHLSIPNFNQYEAMSCDFNGG
                     KISVQYNLSHSYAGDAANHCGTVANGVLQTFMRMAWGGSYIALDSGRGNWDCIMTSYQ
                     YLIIQNTTWEDHCQFSRPSPIGYLGLLSQRTRDIYISRRLLGTFTWTLSDSEGKDTPG
                     GYCLTRWMLIEAELKCFGNTAVAKCNEKHDEEFCDMLRLFDFNKQAIQRLKAEAQMSI
                     QLINKAVNALINDQLIMKNHLRDIMGIPYCNYSKYWYLNHTTTGRTSLPKCWLVSNGS
                     YLNETHFSDDIEQQADNMITEMLQKEYMERQGKTPLGLVDLFVFSTSFYLISIFLHLV
                     KIPTHRHIVGKSCPKPHRLNHMGICSCGLYKQPGVPVKWKR"
     repeat_region   3383..3402
                     /note="3' conserved complimentary terminus"
ORIGIN
        1 cgcacagtgg atcctaggct attggattgc gctttgcttt tgtcattttg gcagatagtc
       61 tcagttcttt gttgcgtgca tacaacacaa caatctggcg atgagtgcct caaaggaaat
      121 aaaatccttt ttgtggacac aatctttgag gagggaatta tctggttact gctccaacat
      181 caaactacag gtggtgaaag atgcccaggc tcttttacat ggacttgact tctccgaagt
      241 cagtaatgtt caacggttga tgcgcaagga gagaagggat gacaatgatt tgaaacggtt
      301 gagggaccta aatcaagcgg tcaacaatct tgttgaatta aaatcaactc aacaaaagag
      361 tatactgaga gttgggactc taacctcaga tgacttatta atcttagccg ctgatctaga
      421 gaagttaaag tcaaaggtga tcagaacaga aaggccatta agtgcaggtg tctatatggg
      481 caacctaagc tcacagcaac ttgaccaaag aagagctctc ctgaatatga taggaatgag
      541 tggtggtaat caaggggctc gggctgggag agatggagtg gtgagagttt gggatgtgaa
      601 aaatgcagag ttgctcaata atcagttcgg gaccatgcca agtctgacac tggcatgtct
      661 gacaaaacag gggcaggttg acttgaatga tgcagtacaa gcattgacag atttgggttt
      721 gatctacaca gcaaagtatc ccaacacttc agacttagac aggctgactc aaagtcatcc
      781 catcctaaat atgattgaca ccaagaaaag ctctttgaat atctcaggtt ataattttag
      841 cttgggtgca gctgtgaagg caggagcttg catgctggat ggtggcaata tgttggagac
      901 aatcaaggtg tcacctcaga caatggatgg tatcctcaaa tccattttaa aggtcaagaa
      961 ggctcttgga atgttcattt cagacacccc tggtgaaagg aatccttatg aaaacatact
     1021 ctacaagatt tgtttgtcag gagatggatg gccatatatt gcatcaagaa cctcaataac
     1081 aggaagggcc tgggaaaaca ctgtcgttga tctggaatca gatgggaagc cacagaaagc
     1141 tgacagcaac aattccagta aatccctgca gtcggcaggg tttaccgctg ggcttaccta
     1201 ttctcagctg atgaccctca aggatgcaat gctgcaactt gacccaaatg ctaagacctg
     1261 gatggacatt gaaggaagac ctgaagatcc agtggaaatt gccctctatc aaccaagttc
     1321 aggctgctac atacacttct tccgtgaacc tactgattta aagcagttca agcaggatgc
     1381 taagtactca catgggattg atgtcacaga cctcttcgct acacaaccgg gcttgaccag
     1441 tgctgtcatt gatgcactcc cccggaatat ggtcattacc tgtcaggggt ccgatgacat
     1501 aaggaaactc cttgaatcac aaggaagaaa agacattaaa ctaattgata ttgccctcag
     1561 caaaactgat tccaggaagt atgaaaatgc agtctgggac cagtataaag acttatgcca
     1621 catgcacaca ggtgtcgttg ttgaaaagaa gaaaagaggc ggtaaagagg aaataacccc
     1681 tcactgtgca ctaatggact gcatcatgtt tgatgcagca gtgtcaggag gactgaacac
     1741 atcggttttg agagcagtgc tgcccagaga tatggtgttc agaacatcga cacctagagt
     1801 cgttctgtaa atggacgccc ccgtgaccca ccgccaatag gcggtgggtc acgggggccc
     1861 tgacaagggt ctcatctctt ccatttcaca ggcacaccag gctgtttgta gagtccacag
     1921 gaacaaatgc ccatatgatt caatctgtga ggtttgggac acgacttgcc tacaatatgc
     1981 ctatgagttg gtattttgac taggtgaagg aagatgctaa taagatagaa acttgtactg
     2041 aacacaaaga ggtcaactag acccaatggt gtcttcccct gcctctccat atactccttc
     2101 tgtaacatct cagtgatcat attgtcagct tgttgttcaa tatcatcaga aaagtgggtc
     2161 tcgttcaagt atgaaccatt tgatacaagc caacatttgg gcagtgatgt tctcccagta
     2221 gttgtgtggt tgaggtacca atacttgctg taattacagt atggaattcc catgatgtcc
     2281 cgtagatggt tcttcattat aagttggtca tttatcaaag catttactgc tttgttgatc
     2341 aactgaatgc tcatttgtgc ttcagctttc aacctttgaa tggcttgttt gttgaagtca
     2401 aacagcctca gcatgtcaca aaattcctca tcatgcttct cattacattt tgccacagct
     2461 gtgttcccga agcattttag ttcagcctca attagcatcc acctggtcag acaatatccc
     2521 cctggtgtgt ctttaccttc agaatctgac agtgtccatg tgaatgtgcc tagcaatctt
     2581 ctactaatat aaatatctct agtcctttgt gagaggagcc cgagataacc gatgggagat
     2641 ggtctcgaga attggcagtg atcttcccag gttgtatttt ggattatcag atattgataa
     2701 ctagtcataa tacagtccca gttgccacgg cctgagtcaa gagcaatgta gctcccaccc
     2761 caagccatcc tcataaaagt ctgtaacaca ccatttgcaa cagtaccaca atggttggct
     2821 gcatccccag catagctgtg actcaggttg tactgcacac taatctttcc cccattaaaa
     2881 tcgcagctca ttgcctcata ctgattgaag ttggggatgg acaagtggaa agttgagatt
     2941 atgctcataa gagcgtggtc atagaggttc tttttgtggg catcagacag attgcaaaat
     3001 ttgtgattaa taatgctcgt gttggtcaag gtcagttcta gtcctgtctc attgcccacc
     3061 attatataat gatgactgtt gttctttgtg caggagagag gcatggtcat attgagtgtc
     3121 tccatgttta gttccagagt ctgaagctca taaacccctt tataaagact ggttgtgcaa
     3181 gacctaccac acaacaggag gaaagtgacc aaaccaacaa ggccacacgt tgcaaaattg
     3241 tacagacctt tcagcactgc tagtacagac agtgcaatga gaacaatgtt catcacctct
     3301 tctattacat gaggcacttc ctggaagaat gtcactattt gtcccatttt aaataggaca
     3361 cttgaattgc gcaaccaaaa atgcctagga tccccggtgc gc
//
