# This file defines the SARS-CoV-2 datasets displayed on nextstrain.org/sars-cov-2/

# Documentation on how to modify this YAML in order to add a build is at:
# https://docs.nextstrain.org/en/latest/guides/share/sars-cov-2.html

datasets:

  # The following section of heading entries, which don't themselves define a build,
  # are used to organise the rendered table into appropriate hierarchies. They are not
  # used for the <Map>
  - name: Global
    geo: global
    parentGeo: null

  - name: Pakistan
    geo: pakistan
    parentGeo: asia

  - name: South America
    geo: south-america
    parentGeo: null

  - name: Peru
    geo: peru
    parentGeo: south-america

  - name: Europe
    geo: europe
    parentGeo: null

  - name: Oceania
    geo: oceania
    parentGeo: null

  - name: Africa
    geo: africa
    parentGeo: null

  - name: Asia
    geo: asia
    parentGeo: null

  - name: North America
    geo: north-america
    parentGeo: null

  - name: Cameroon
    geo: cameroon
    parentGeo: central-africa

  - name: New Zealand
    geo: new_zealand
    parentGeo: oceania

  - name: Zambia
    geo: zambia
    parentGeo: southern-africa

  - name: South Africa
    geo: south-africa
    parentGeo: southern-africa

  - name: Canada
    geo: canada
    parentGeo: north-america

  - name: Quebec
    geo: quebec
    parentGeo: canada

  - name: Ontario
    geo: ontario
    parentGeo: canada

  - name: USA
    geo: usa
    parentGeo: north-america

  - name: Alabama
    geo: alabama
    parentGeo: usa

  - name: Alaska
    geo: alaska
    parentGeo: usa

  - name: Arizona
    geo: arizona
    parentGeo: usa

  - name: Arkansas
    geo: arkansas
    parentGeo: usa

  - name: California
    geo: california
    parentGeo: usa

  - name: Colorado
    geo: colorado
    parentGeo: usa

  - name: Connecticut
    geo: connecticut
    parentGeo: usa

  - name: Delaware
    geo: delaware
    parentGeo: usa

  - name: Florida
    geo: florida
    parentGeo: usa

  - name: Georgia
    geo: georgia
    parentGeo: usa

  - name: Hawaii
    geo: hawaii
    parentGeo: usa

  - name: Idaho
    geo: idaho
    parentGeo: usa

  - name: Illinois
    geo: illinois
    parentGeo: usa

  - name: Indiana
    geo: indiana
    parentGeo: usa

  - name: Iowa
    geo: iowa
    parentGeo: usa

  - name: Kansas
    geo: kansas
    parentGeo: usa

  - name: Kentucky
    geo: kentucky
    parentGeo: usa

  - name: Louisiana
    geo: louisiana
    parentGeo: usa

  - name: Maine
    geo: maine
    parentGeo: usa

  - name: Maryland
    geo: maryland
    parentGeo: usa

  - name: Massachusetts
    geo: massachusetts
    parentGeo: usa

  - name: Michigan
    geo: michigan
    parentGeo: usa

  - name: Minnesota
    geo: minnesota
    parentGeo: usa

  - name: Mississippi
    geo: mississippi
    parentGeo: usa

  - name: Missouri
    geo: missouri
    parentGeo: usa

  - name: Montana
    geo: montana
    parentGeo: usa

  - name: Nebraska
    geo: nebraska
    parentGeo: usa

  - name: Nevada
    geo: nevada
    parentGeo: usa

  - name: New Hampshire
    geo: new_hampshire
    parentGeo: usa

  - name: New Jersey
    geo: new_jersey
    parentGeo: usa

  - name: New Mexico
    geo: new_mexico
    parentGeo: usa

  - name: New York
    geo: new_york
    parentGeo: usa

  - name: North Carolina
    geo: north_carolina
    parentGeo: usa

  - name: North Dakota
    geo: north_dakota
    parentGeo: usa

  - name: Ohio
    geo: ohio
    parentGeo: usa

  - name: Oklahoma
    geo: oklahoma
    parentGeo: usa

  - name: Oregon
    geo: oregon
    parentGeo: usa

  - name: Pennsylvania
    geo: pennsylvania
    parentGeo: usa

  - name: Puerto Rico
    geo: puerto_rico
    parentGeo: usa

  - name: Rhode Island
    geo: rhode_island
    parentGeo: usa

  - name: South Carolina
    geo: south_carolina
    parentGeo: usa

  - name: South Dakota
    geo: south_dakota
    parentGeo: usa

  - name: Tennessee
    geo: tennessee
    parentGeo: usa

  - name: Texas
    geo: texas
    parentGeo: usa

  - name: Utah
    geo: utah
    parentGeo: usa

  - name: Vermont
    geo: vermont
    parentGeo: usa

  - name: Virginia
    geo: virginia
    parentGeo: usa

  - name: Washington
    geo: washington
    parentGeo: usa

  - name: Washington DC
    geo: washington_dc
    parentGeo: usa

  - name: West Virginia
    geo: west_virginia
    parentGeo: usa

  - name: Wisconsin
    geo: wisconsin
    parentGeo: usa

  - name: Wyoming
    geo: wyoming
    parentGeo: usa

  - name: Austria
    geo: austria
    parentGeo: europe

  - name: Spain
    geo: spain
    parentGeo: europe

  - name: Switzerland
    geo: switzerland
    parentGeo: europe

  - name: Portugal
    geo: portugal
    parentGeo: europe

  - name: Belarus
    geo: belarus
    parentGeo: europe

  - name: Belgium
    geo: belgium
    parentGeo: europe

  - name: Bosnia and Herzegovina
    geo: bosnia_and_herzegovina
    parentGeo: europe

  - name: Bulgaria
    geo: bulgaria
    parentGeo: europe

  - name: Croatia
    geo: croatia
    parentGeo: europe

  - name: Czech Republic
    geo: czech_republic
    parentGeo: europe

  - name: Denmark
    geo: denmark
    parentGeo: europe

  - name: Estonia
    geo: estonia
    parentGeo: europe

  - name: Finland
    geo: finland
    parentGeo: europe

  - name: France
    geo: france
    parentGeo: europe

  - name: Germany
    geo: germany
    parentGeo: europe

  - name: Greece
    geo: greece
    parentGeo: europe

  - name: Hungary
    geo: hungary
    parentGeo: europe

  - name: Iceland
    geo: iceland
    parentGeo: europe

  - name: Ireland
    geo: ireland
    parentGeo: europe

  - name: Israel
    geo: israel
    parentGeo: europe

  - name: Italy
    geo: italy
    parentGeo: europe

  - name: Latvia
    geo: latvia
    parentGeo: europe

  - name: Lithuania
    geo: lithuania
    parentGeo: europe

  - name: Luxembourg
    geo: luxembourg
    parentGeo: europe

  - name: Netherlands
    geo: netherlands
    parentGeo: europe

  - name: Norway
    geo: norway
    parentGeo: europe

  - name: Poland
    geo: poland
    parentGeo: europe

  - name: Romania
    geo: romania
    parentGeo: europe

  - name: Russia
    geo: russia
    parentGeo: europe

  - name: Serbia
    geo: serbia
    parentGeo: europe

  - name: Slovakia
    geo: slovakia
    parentGeo: europe

  - name: Slovenia
    geo: slovenia
    parentGeo: europe

  - name: Sweden
    geo: sweden
    parentGeo: europe

  - name: United Kingdom
    geo: united_kingdom
    parentGeo: europe

  - name: Bangladesh
    geo: bangladesh
    parentGeo: asia

  - name: Sri Lanka
    geo: sri-lanka
    parentGeo: asia

  - name: India
    geo: india
    parentGeo: asia

  - name: Thailand
    geo: thailand
    parentGeo: asia

  - name: Japan
    geo: japan
    parentGeo: asia

  - name: Middle East
    geo: middle-east
    parentGeo: null

  - name: Gulf Cooperation Council
    geo: gcc
    parentGeo: asia

  - name: Central Africa
    geo: central-africa
    parentGeo: africa

  - name: Eastern Africa
    geo: eastern-africa
    parentGeo: africa

  - name: Northern Africa
    geo: northern-africa
    parentGeo: africa

  - name: Southern Africa
    geo: southern-africa
    parentGeo: africa

  - name: Western Africa
    geo: western-africa
    parentGeo: africa

  - name: Burundi
    geo: burundi
    parentGeo: central-africa

  - name: Central African Republic
    geo: central-african-republic
    parentGeo: central-africa

  - name: Chad
    geo: chad
    parentGeo: central-africa

  - name: Republic of the Congo
    geo: republic-of-the-congo
    parentGeo: central-africa

  - name: Democratic Republic of the Congo
    geo: democratic-republic-of-the-congo
    parentGeo: central-africa

  - name: Equatorial Guinea
    geo: equatorial-guinea
    parentGeo: central-africa

  - name: Gabon
    geo: gabon
    parentGeo: central-africa

  - name: Comoros
    geo: comoros
    parentGeo: eastern-africa

  - name: Djibouti
    geo: djibouti
    parentGeo: eastern-africa

  - name: Ethiopia
    geo: ethiopia
    parentGeo: eastern-africa

  - name: Kenya
    geo: kenya
    parentGeo: eastern-africa

  - name: Madagascar
    geo: madagascar
    parentGeo: eastern-africa

  - name: Mauritius
    geo: mauritius
    parentGeo: eastern-africa

  - name: Rwanda
    geo: rwanda
    parentGeo: eastern-africa

  - name: Seychelles
    geo: seychelles
    parentGeo: eastern-africa

  - name: Somalia
    geo: somalia
    parentGeo: eastern-africa

  - name: South Sudan
    geo: south-sudan
    parentGeo: eastern-africa

  - name: Sudan
    geo: sudan
    parentGeo: eastern-africa

  - name: Uganda
    geo: uganda
    parentGeo: eastern-africa

  - name: Algeria
    geo: algeria
    parentGeo: northern-africa

  - name: Egypt
    geo: egypt
    parentGeo: northern-africa

  - name: Libya
    geo: libya
    parentGeo: northern-africa

  - name: Morocco
    geo: morocco
    parentGeo: northern-africa

  - name: Tunisia
    geo: tunisia
    parentGeo: northern-africa

  - name: Angola
    geo: angola
    parentGeo: southern-africa

  - name: Botswana
    geo: botswana
    parentGeo: southern-africa

  - name: Eswatini
    geo: eswatini
    parentGeo: southern-africa

  - name: Lesotho
    geo: lesotho
    parentGeo: southern-africa

  - name: Malawi
    geo: malawi
    parentGeo: southern-africa

  - name: Mozambique
    geo: mozambique
    parentGeo: southern-africa

  - name: Namibia
    geo: namibia
    parentGeo: southern-africa

  - name: Zimbabwe
    geo: zimbabwe
    parentGeo: southern-africa

  - name: Benin
    geo: benin
    parentGeo: western-africa

  - name: Burkina Faso
    geo: burkina-faso
    parentGeo: western-africa

  - name: Cabo Verde
    geo: cabo-verde
    parentGeo: western-africa

  - name: Cote d'Ivoire
    geo: cote-d-ivoire
    parentGeo: western-africa

  - name: Gambia
    geo: gambia
    parentGeo: western-africa

  - name: Ghana
    geo: ghana
    parentGeo: western-africa

  - name: Guinea
    geo: guinea
    parentGeo: western-africa

  - name: Guinea-Bissau
    geo: guinea-bissau
    parentGeo: western-africa

  - name: Liberia
    geo: liberia
    parentGeo: western-africa

  - name: Mali
    geo: mali
    parentGeo: western-africa

  - name: Niger
    geo: niger
    parentGeo: western-africa

  - name: Nigeria
    geo: nigeria
    parentGeo: western-africa

  - name: Senegal
    geo: senegal
    parentGeo: western-africa

  - name: Sierra Leone
    geo: sierra-leone
    parentGeo: western-africa

  - name: Togo
    geo: togo
    parentGeo: western-africa

  # Entries below this comment define datasets. They should have a URL pointing to the analysis
  # visualisation as well as a name and coords for rendering on the map. The `geo` value should
  # map to a non-dataset (stub) entry defined above.

  - url: https://nextstrain.org/ncov/global
    name: Global
    geo: global
    level: region
    coords:
      - -30
      - 10
    org:
      name: Nextstrain Team

  - url: https://nextstrain.org/community/quipupe/Nextstrain_Peru
    name: Peru
    geo: peru
    level: country
    coords:
      - -75.0152
      - -9.1900
    org:
      name: Laboratorio de Genómica Microbiana - Universidad Peruana Cayetano Heredia
      url: https://investigacion.cayetano.edu.pe/catalogo/saludintegral/genomicamicrobiana

  - url: https://nextstrain.org/ncov/south-america?f_region=South%20America
    name: South America
    geo: south-america
    level: region
    coords:
      - -58.470721
      - -13.083583
    org:
      name: Nextstrain Team

  - url: https://nextstrain.org/ncov/europe?f_region=Europe
    name: Europe
    geo: europe
    level: region
    coords:
      - 11.74
      - 39.646237
    org:
      name: Nextstrain Team

  - url: https://nextstrain.org/groups/neherlab/ncov/europe?f_region=Europe&p=grid
    name: Europe
    geo: europe
    level: region
    coords:
      - 10.799454
      - 49.646237
    org:
      name: neherlab
      url: https://neherlab.org

  - url: https://nextstrain.org/ncov/africa?f_region=Africa
    name: Africa
    geo: africa
    level: region
    coords:
      - 21.824559
      - 4.070194
    org:
      name: Nextstrain Team

  - url: https://nextstrain.org/community/BryanTegomoh/Nextstrain-Builds@main/Cameroon
    name: Cameroon
    geo: cameroon
    level: country
    coords:
      - 13.1535811
      - 4.6125522
    org:
      name: Bryan Tegomoh (CDCF/NDHHS)
      url: https://github.com/BryanTegomoh

  - url: https://nextstrain.org/groups/SC2ZamPub/ncov/africa/zambia
    name: Zambia
    geo: zambia
    level: country
    coords:
      - 30
      - -15
    org:
      name: Zambia Genomic Sequencing Consortium
      url: https://nextstrain.org/groups/SC2ZamPub

  - url: https://nextstrain.org/groups/ngs-sa
    name: South Africa
    geo: south-africa
    level: country
    coords:
      - 30
      - -25
    org:
      name: Network for Genomics Surveillance in South Africa (NGS-SA)
      url: https://www.krisp.org.za/ngs-sa/index.php

  - url: https://nextstrain.org/ncov/asia?f_region=Asia
    name: Asia
    geo: asia
    level: region
    coords:
      - 86.654576
      - 30.451098
    org:
      name: Nextstrain Team

  - url: https://nextstrain.org/ncov/oceania?f_region=Oceania
    name: Oceania
    geo: oceania
    level: region
    coords:
      - 152.008576
      - -25.0562891
    org:
      name: Nextstrain Team

  - url: https://nextstrain.org/ncov/north-america?f_region=North%20America
    name: North America
    geo: north-america
    level: region
    coords:
      - -107.738017
      - 28.2367447
    org:
      name: Nextstrain Team

  - url: https://covseq.ca/
    name: CoVSeQ
    geo: quebec
    level: division
    coords:
      - -73.5491
      - 52.9399
    org:
      name: CoVSeQ Partnership
      url: https://covseq.ca/about

  - url: https://nextstrain.org/community/narratives/ESR-NZ/GenomicsNarrativeSARSCoV2/aotearoa-border-incursions
    name: Real-time genomics to track COVID-19 post-elimination border incursions in Aotearoa New Zealand
    geo: new_zealand
    level: country
    coords:
      - 171.95
      - -39.5
    org:
      name: Douglas et al

  - url: https://nextstrain.org/community/narratives/ESR-NZ/GenomicsNarrativeSARSCoV2/2020-10-01
    name: Re-emergence of community transmission in Aotearoa New Zealand - Genomic overview of the Auckland Outbreak
    geo: new_zealand
    level: country
    coords:
      - 174.249
      - -40.5470
    org:
      name: Hadfield, Douglas et al

  - url: http://auspice.finlaymagui.re/ncov/north-america/canada?f_country=Canada
    name: Canada
    geo: canada
    level: country
    coords:
      - -106.3468
      - 56.1304
    org:
      name: Maguire et. al., for work with ONCoV/CanCOGeN
      url: https://finlaymagui.re

  - url: http://auspice.finlaymagui.re/ncov/north-america/canada/ontario?f_division=Ontario
    name: Ontario, Canada
    geo: ontario
    level: division
    coords:
      - -85.3232
      - 51.2538
    org:
      name: Maguire et. al., for work with ONCoV/CanCOGeN
      url: https://finlaymagui.re

  - url: https://nextstrain.org/community/SESchmedes/sarscov2-southeast-usa/southeast
    name: South-East Region
    geo: usa
    level: country
    coords:
      - -80.0
      - 34.0
    org:
      name: FL-BPHL
      url: http://www.floridahealth.gov/programs-and-services/public-health-laboratories/index.html

  - url: https://nextstrain.org/community/emmahodcroft/south-usa-sarscov2/south-central
    name: South-Central Region
    geo: usa
    level: country
    coords:
      - -95.0
      - 30.0
    org:
      name: Hodcroft et al.
      url: https://github.com/emmahodcroft/south-usa-sarscov2/

  - url: https://nextstrain.org/groups/spheres/ncov/alabama
    name: Alabama
    geo: alabama
    level: division
    coords:
    - -86.8
    - 33.5
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/alaska
    name: Alaska
    geo: alaska
    level: division
    coords:
    - -149.9
    - 61.2
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/arizona
    name: Arizona
    geo: arizona
    level: division
    coords:
    - -113.1
    - 33.4
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/community/tgennorth/arizona-covid-19/AZ
    name: Arizona
    geo: arizona
    level: division
    coords:
    - -111.1
    - 33.4
    org:
      name: TGen North
      url: https://www.tgen.org/patients/pathogen-microbiome/

  - url: https://nextstrain.org/groups/spheres/ncov/arkansas
    name: Arkansas
    geo: arkansas
    level: division
    coords:
    - -92.4
    - 35.2
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/community/NIH-BIGVI-PAKISTAN/ncov/Pakistan
    name: Pakistan
    geo: pakistan
    level: country
    coords:
    - 67.3451
    - 29
    org:
      name: NIH BIGVI BioInformatics Group of VIrology - Pakistan
      url: https://www.nih.org.pk/

  - url: https://nextstrain.org/community/AKU-CITRIC-Center-for-Bioinformatics/ncov/Pakistan
    name: Pakistan
    geo: pakistan
    level: country
    coords:
    - 68.3451
    - 29
    org:
      name: CITRIC Center for Bioinformatics Aga Khan University Pakistan
      url: https://www.aku.edu/Pages/home.aspx

  - url: https://nextstrain.org/groups/spheres/ncov/california
    name: California
    geo: california
    level: division
    coords:
    - -122.0
    - 37.9
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/colorado
    name: Colorado
    geo: colorado
    level: division
    coords:
    - -105.0
    - 39.7
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/connecticut
    name: Connecticut
    geo: connecticut
    level: division
    coords:
    - -72.7
    - 41.6
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/delaware
    name: Delaware
    geo: delaware
    level: division
    coords:
    - -75.4
    - 38.7
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/florida
    name: Florida
    geo: florida
    level: division
    coords:
    - -82.4
    - 27.9
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/georgia
    name: Georgia
    geo: georgia
    level: division
    coords:
    - -84.4
    - 33.7
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/hawaii
    name: Hawaii
    geo: hawaii
    level: division
    coords:
    - -157.9
    - 21.3
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/idaho
    name: Idaho
    geo: idaho
    level: division
    coords:
    - -116.2
    - 43.6
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/illinois
    name: Illinois
    geo: illinois
    level: division
    coords:
    - -89.6
    - 40.7
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/indiana
    name: Indiana
    geo: indiana
    level: division
    coords:
    - -86.2
    - 40.3
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/iowa
    name: Iowa
    geo: iowa
    level: division
    coords:
    - -93.3
    - 41.9
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/kansas
    name: Kansas
    geo: kansas
    level: division
    coords:
    - -98.6
    - 38.3
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/kentucky
    name: Kentucky
    geo: kentucky
    level: division
    coords:
    - -85.2
    - 37.6
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/louisiana
    name: Louisiana
    geo: louisiana
    level: division
    coords:
    - -90.0
    - 29.9
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/maine
    name: Maine
    geo: maine
    level: division
    coords:
    - -68.9
    - 45.7
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/maryland
    name: Maryland
    geo: maryland
    level: division
    coords:
    - -76.9
    - 39.5
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/massachusetts
    name: Massachusetts
    geo: massachusetts
    level: division
    coords:
    - -72.0
    - 42.4
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/michigan
    name: Michigan
    geo: michigan
    level: division
    coords:
    - -84.6
    - 42.7
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/minnesota
    name: Minnesota
    geo: minnesota
    level: division
    coords:
    - -94.2
    - 45.6
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/mississippi
    name: Mississippi
    geo: mississippi
    level: division
    coords:
    - -89.7
    - 32.9
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/missouri
    name: Missouri
    geo: missouri
    level: division
    coords:
    - -92.6
    - 38.8
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/montana
    name: Montana
    geo: montana
    level: division
    coords:
    - -111.3
    - 47.5
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/nebraska
    name: Nebraska
    geo: nebraska
    level: division
    coords:
    - -98.6
    - 41.7
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/nebraska-dhhs
    name: Nebraska
    geo: nebraska
    level: division
    coords:
    - -101.6
    - 41.7
    org:
      name: Nebraska Department of Health and Human Services (DHHS)
      url: dhhs.ne.gov/

  - url: https://nextstrain.org/community/BryanTegomoh/NebraskaDHHSNextStrainBuild/Nebraska/Last/Four/EpiWeeks
    name: Nebraska Last Four EpiWeeks
    geo: nebraska
    level: division
    coords:
    - -100.6
    - 41.7
    org:
      name: Bryan Tegomoh (CDCF/NDHHS)
      url: dhhs.ne.gov/

  - url: https://nextstrain.org/community/josephfauver/ncovNE@main/
    name: Nebraska
    geo: nebraska
    level: division
    coords:
    - -102.6
    - 41.7
    org:
      name: Joseph Fauver
      url: https://grubaughlab.com/

  - url: https://nextstrain.org/groups/spheres/ncov/nevada
    name: Nevada
    geo: nevada
    level: division
    coords:
    - -116.9
    - 39.5
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/new-hampshire
    name: New Hampshire
    geo: new_hampshire
    level: division
    coords:
    - -71.7
    - 43.5
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/new-jersey
    name: New Jersey
    geo: new_jersey
    level: division
    coords:
    - -74.4
    - 40.1
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/new-mexico
    name: New Mexico
    geo: new_mexico
    level: division
    coords:
    - -106.9
    - 34.0
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/new-york
    name: New York
    geo: new_york
    level: division
    coords:
    - -74.0
    - 40.7
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/north-carolina
    name: North Carolina
    geo: north_carolina
    level: division
    coords:
    - -79.0
    - 35.7
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/north-dakota
    name: North Dakota
    geo: north_dakota
    level: division
    coords:
    - -100.5
    - 47.6
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/ohio
    name: Ohio
    geo: ohio
    level: division
    coords:
    - -82.7
    - 40.2
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/oklahoma
    name: Oklahoma
    geo: oklahoma
    level: division
    coords:
    - -97.2
    - 34.9
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/oregon
    name: Oregon
    geo: oregon
    level: division
    coords:
    - -120.7
    - 44.0
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/pennsylvania
    name: Pennsylvania
    geo: pennsylvania
    level: division
    coords:
    - -77.7
    - 41.0
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/puerto-rico
    name: Puerto Rico
    geo: puerto_rico
    level: division
    coords:
    - -65.9
    - 18.2
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/rhode-island
    name: Rhode Island
    geo: rhode_island
    level: division
    coords:
    - -71.6
    - 41.8
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/south-carolina
    name: South Carolina
    geo: south_carolina
    level: division
    coords:
    - -80.4
    - 33.7
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/south-dakota
    name: South Dakota
    geo: south_dakota
    level: division
    coords:
    - -100.3
    - 44.6
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/tennessee
    name: Tennessee
    geo: tennessee
    level: division
    coords:
    - -88.8
    - 35.6
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/texas
    name: Texas
    geo: texas
    level: division
    coords:
    - -96.3
    - 30.6
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/utah
    name: Utah
    geo: utah
    level: division
    coords:
    - -111.7
    - 39.4
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/vermont
    name: Vermont
    geo: vermont
    level: division
    coords:
    - -72.5
    - 44.6
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/virginia
    name: Virginia
    geo: virginia
    level: division
    coords:
    - -78.5
    - 37.1
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/washington
    name: Washington
    geo: washington
    level: division
    coords:
    - -119.0
    - 46.9
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/washington-dc
    name: Washington DC
    geo: washington_dc
    level: division
    coords:
    - -77.0
    - 38.9
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/west-virginia
    name: West Virginia
    geo: west_virginia
    level: division
    coords:
    - -80.8
    - 38.5
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/wisconsin
    name: Wisconsin
    geo: wisconsin
    level: division
    coords:
    - -89.4
    - 43.1
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/groups/spheres/ncov/wyoming
    name: Wyoming
    geo: wyoming
    level: division
    coords:
    - -107.6
    - 43.2
    org:
      name: CDC/AMD
      url: https://www.cdc.gov/amd/

  - url: https://nextstrain.org/community/czbiohub/covidtracker/ca
    name: California
    geo: california
    level: division
    coords:
      - -118.0
      - 36.357039
    org:
      name: CZ BioHub
      url: https://www.czbiohub.org

  - url: https://nextstrain.org/community/andersen-lab/HCoV-19-Genomics-Nextstrain/hCoV-19/usa/california
    name: California
    geo: california
    level: division
    coords:
      - -121.0
      - 37.357039
    org:
      name: SEARCH, San Diego
      url: https://searchcovid.info/

  - url: https://nextstrain.org/community/andersen-lab/HCoV-19-Genomics-Nextstrain/hCoV-19/usa/sandiego
    name: San Diego
    geo: california
    level: location
    coords:
      - -118.143358
      - 33.733024
    org:
      name: SEARCH, San Diego
      url: https://searchcovid.info/

  - url: https://nextstrain.org/community/tewhey-lab/ncov-ME/latest
    name: Maine
    geo: maine
    level: division
    coords:
      - -69.4455
      - 45.2538
    org:
      name: Tewhey Lab
      url: http://www.tewheylab.org/

  - url: https://nextstrain.org/community/grubaughlab/CT-SARS-CoV-2/current
    name: Connecticut
    geo: connecticut
    level: division
    coords:
      - -72.669773
      - 41.678117
    org:
      name: Grubaugh Lab
      url: http://grubaughlab.com

  - url: https://nextstrain.org/community/SESchmedes/sarscov2-florida/florida
    name: Florida
    geo: florida
    level: division
    coords:
      - -81.5158
      - 27.6648
    org:
      name: FL-BPHL
      url: http://www.floridahealth.gov/programs-and-services/public-health-laboratories/index.html

  - url: https://nextstrain.org/community/emmahodcroft/south-usa-sarscov2/louisiana
    name: Louisiana
    geo: louisiana
    level: division
    coords:
      - -91.9623
      - 30.9843
    org:
      name: LCSC
      url: https://github.com/emmahodcroft/south-usa-sarscov2/

  - url: https://auspice.broadinstitute.org/sars-cov-2/boston/genbank
    name: Boston GenBank
    geo: massachusetts
    level: location
    coords:
      - -71.18
      - 42.45
    org:
      name: Broad Institute
      url: https://auspice.broadinstitute.org

  - url: https://auspice.broadinstitute.org/sars-cov-2/boston/gisaid-4k
    name: Boston GISAID (4k)
    geo: massachusetts
    level: location
    coords:
      - -71
      - 42.25
    org:
      name: Broad Institute
      url: https://auspice.broadinstitute.org

  - url: https://nextstrain.org/community/emmahodcroft/south-usa-sarscov2/texas?f_country=USA&p=grid
    name: Texas
    geo: texas
    level: division
    coords:
      - -99.188758
      - 31.146868
    org:
      name: Hodcroft et al.
      url: https://github.com/emmahodcroft/south-usa-sarscov2/

  - url: https://nextstrain.org/groups/blab/ncov/wa/4m
    name: Washington
    geo: washington
    level: division
    coords:
      - -120.644869
      - 46.988611
    org:
      name: Bedford Lab
      url: https://bedford.io/

  - url: https://nextstrain.org/groups/waphl/
    name: Washington
    geo: washington
    level: division
    coords:
      - -121.644869
      - 46.988611
    org:
      name: Washington State Public Health Laboratories
      url: www.doh.wa.gov/AboutUs/ProgramsandServices/DiseaseControlandHealthStatistics/PublicHealthLaboratories

  - url: https://go.wisc.edu/r7374f
    name: Wisconsin
    geo: wisconsin
    level: division
    coords:
      - -89.527762
      - 44.535145
    org:
      name: WISC
      url: https://openresearch.labkey.com/Coven/project-begin.view?

  - url: https://nextstrain.org/community/bergthalerlab/NextstrainAustria
    name: Austria
    geo: austria
    level: country
    coords:
      - 14.5
      - 47
    org:
      name: Bergthaler Lab
      url: https://cemm.at/en/research/groups/andreas-bergthaler-group/

  - url: https://nextstrain.org/groups/neherlab/ncov/austria?c=clade_membership&f_country=Austria&p=grid&r=division
    name: Austria
    geo: austria
    level: country
    coords:
      - 14.5
      - 48
    org:
      name: neherlab
      url: https://neherlab.org

  - url: https://nextstrain.org/groups/nextspain/ncov19-Spain
    name: Spain
    geo: spain
    level: country
    coords:
      - -3.7492
      - 41
    org:
      name: FISABIO Sequencing and Bioinformatics Service
      url: http://www.fisabio-ngs.com/en/

  - url: https://nextstrain.org/groups/neherlab/ncov/spain?c=clade_membership&f_country=Spain&p=grid&r=division
    name: Spain
    geo: spain
    level: country
    coords:
      - -3.65
      - 39
    org:
      name: neherlab
      url: https://neherlab.org

  - url: https://nextstrain.org/groups/swiss/ncov/switzerland
    name: Switzerland
    geo: switzerland
    level: country
    coords:
      - 8.2275
      - 46.8182
    org:
      name: nextstrain.org/groups/swiss
      url: https://nextstrain.org/groups/swiss/

  - url: https://insaflu.insa.pt/covid19/
    name: Portugal
    geo: portugal
    level: country
    coords:
      - -8.1
      - 38
    org:
      name: INSA / NIH Portugal
      url: http://www.insa.pt/

  - url: https://nextstrain.org/groups/neherlab/ncov/portugal?c=clade_membership&f_country=Portugal&p=grid&r=division
    name: Portugal
    geo: portugal
    level: country
    coords:
      - -8.174701
      - 40
    org:
      name: neherlab
      url: https://neherlab.org

  - url: https://nextstrain.org/groups/neherlab/ncov/belarus?c=clade_membership&f_country=Belarus&p=grid&r=division
    name: Belarus
    geo: belarus
    level: country
    coords:
      - 28.247691
      - 53.704205
    org:
      name: neherlab
      url: https://neherlab.org

  - url: https://nextstrain.org/groups/neherlab/ncov/belgium?c=clade_membership&f_country=Belgium&p=grid&r=division
    name: Belgium
    geo: belgium
    level: country
    coords:
      - 4.3517
      - 50.8503
    org:
      name: neherlab
      url: https://neherlab.org

  - url: https://nextstrain.org/community/GuyBaele/sars-cov-2-belgium?c=clade_membership&f_country=Belgium
    name: Belgium
    geo: belgium
    level: country
    coords:
      - 4.7005
      - 50.8798
    org:
      name: Baele Lab
      url: https://rega.kuleuven.be/cev/ecv

  - url: https://nextstrain.org/groups/neherlab/ncov/bosnia-and-herzegovina?c=clade_membership&f_country=Bosnia and Herzegovin&p=grid&r=division
    name: Bosnia and Herzegovina
    geo: bosnia_and_herzegovina
    region: Europe
    level: country
    coords:
      - 17.6791
      - 43.9159
    org:
      name: neherlab
      url: https://neherlab.org


  - url: https://nextstrain.org/groups/neherlab/ncov/bulgaria?c=clade_membership&f_country=Bulgaria&p=grid&r=division
    name: Bulgaria
    geo: bulgaria
    level: country
    coords:
      - 25.193668
      - 42.782450
    org:
      name: neherlab
      url: https://neherlab.org

  - url: https://nextstrain.org/groups/neherlab/ncov/croatia?c=clade_membership&f_country=Croatia&p=grid&r=division
    name: Croatia
    geo: croatia
    level: country
    coords:
      - 16
      - 45.4
    org:
      name: neherlab
      url: https://neherlab.org

  - url: https://nextstrain.org/groups/neherlab/ncov/czech-republic?c=clade_membership&f_country=Czech Republic&p=grid&r=division
    name: Czech Republic
    geo: czech_republic
    level: country
    coords:
      - 15.473
      - 49.8175
    org:
      name: neherlab
      url: https://neherlab.org

  - url: https://nextstrain.org/groups/neherlab/ncov/denmark?c=clade_membership&f_country=Denmark&p=grid&r=division
    name: Denmark
    geo: denmark
    level: country
    coords:
      - 9.5018
      - 56.2639
    org:
      name: neherlab
      url: https://neherlab.org

  - url: https://nextstrain.org/groups/neherlab/ncov/estonia?c=clade_membership&f_country=Estonia&p=grid&r=division
    name: Estonia
    geo: estonia
    level: country
    coords:
      - 25.808524
      - 58.850111
    org:
      name: neherlab
      url: https://neherlab.org

  - url: https://nextstrain.org/groups/neherlab/ncov/finland?c=clade_membership&f_country=Finland&p=grid&r=division
    name: Finland
    geo: finland
    level: country
    coords:
      - 26.186437
      - 61.751734
    org:
      name: neherlab
      url: https://neherlab.org

  - url: https://nextstrain.org/groups/neherlab/ncov/france?c=clade_membership&f_country=France&p=grid&r=division
    name: France
    geo: france
    level: country
    coords:
      - 2.2137
      - 46.2276
    org:
      name: neherlab
      url: https://neherlab.org

  - url: https://nextstrain.org/groups/neherlab/ncov/germany?c=clade_membership&f_country=Germany&p=grid&r=division
    name: Germany
    geo: germany
    level: country
    coords:
      - 10.4515
      - 51.1657
    org:
      name: neherlab
      url: https://neherlab.org

  - url: https://nextstrain.org/groups/neherlab/ncov/greece?c=clade_membership&f_country=Greece&p=grid&r=division
    name: Greece
    geo: greece
    level: country
    coords:
      - 22.0
      - 39.0
    org:
      name: neherlab
      url: https://neherlab.org

  - url: https://nextstrain.org/groups/neherlab/ncov/hungary?c=clade_membership&f_country=Hungary&p=grid&r=division
    name: Hungary
    geo: hungary
    level: country
    coords:
      - 20.0
      - 47.0
    org:
      name: neherlab
      url: https://neherlab.org

  - url: https://nextstrain.org/groups/neherlab/ncov/iceland?c=clade_membership&f_country=Iceland&p=grid&r=division
    name: Iceland
    geo: iceland
    level: country
    coords:
      - -18.4826
      - 64.90614
    org:
      name: neherlab
      url: https://neherlab.org

  - url: https://nextstrain.org/groups/neherlab/ncov/ireland?c=clade_membership&f_country=Ireland&p=grid&r=division
    name: Ireland
    geo: ireland
    level: country
    coords:
      - -7.979
      - 52.865
    org:
      name: neherlab
      url: https://neherlab.org

  - url: https://nextstrain.org/groups/neherlab/ncov/israel?c=clade_membership&f_country=Israel&p=grid&r=division
    name: Israel
    geo: israel
    level: country
    coords:
      - 34.903129
      - 31.217736
    org:
      name: neherlab
      url: https://neherlab.org

  - url: https://nextstrain.org/groups/neherlab/ncov/italy?c=clade_membership&f_country=Italy&p=grid&r=division
    name: Italy
    geo: italy
    level: country
    coords:
      - 12.183629
      - 43.382775
    org:
      name: neherlab
      url: https://neherlab.org

  - url: https://nextstrain.org/groups/neherlab/ncov/latvia?c=clade_membership&f_country=Latvia&p=grid&r=division
    name: Latvia
    geo: latvia
    level: country
    coords:
      - 25.441386
      - 56.799689
    org:
      name: neherlab
      url: https://neherlab.org

  - url: https://nextstrain.org/groups/neherlab/ncov/lithuania?c=clade_membership&f_country=Lithuania&p=grid&r=division
    name: Lithuania
    geo: lithuania
    level: country
    coords:
      - 23.945328
      - 55.378752
    org:
      name: neherlab
      url: https://neherlab.org

  - url: https://nextstrain.org/groups/neherlab/ncov/luxembourg?c=clade_membership&f_country=Luxembourg&p=grid&r=division
    name: Luxembourg
    geo: luxembourg
    level: country
    coords:
      - 6.119486
      - 49.755428
    org:
      name: neherlab
      url: https://neherlab.org

  - url: https://nextstrain.org/groups/neherlab/ncov/netherlands?c=clade_membership&f_country=Netherlands&p=grid&r=division
    name: Netherlands
    geo: netherlands
    level: country
    coords:
      - 5.2913
      - 52.1326
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    geo: guinea
    level: country
    coords:
      - -10.7083587
      - 10.7226226
    org:
      name: Africa CDC PGI
      url: https://africacdc.org/institutes/ipg/

  - url: https://nextstrain.org/groups/africa-cdc/ncov/guinea-bissau?c=clade_membership&f_country=Guinea-Bissau&p=grid&tl=country
    name: Guinea-Bissau
    geo: guinea-bissau
    level: country
    coords:
      - -14.9000214
      - 12.100035
    org:
      name: Africa CDC PGI
      url: https://africacdc.org/institutes/ipg/

  - url: https://nextstrain.org/groups/africa-cdc/ncov/liberia?c=clade_membership&f_country=Liberia&p=grid&tl=country
    name: Liberia
    geo: liberia
    level: country
    coords:
      - -9.3658524
      - 5.7499721
    org:
      name: Africa CDC PGI
      url: https://africacdc.org/institutes/ipg/

  - url: https://nextstrain.org/groups/africa-cdc/ncov/mali?c=clade_membership&f_country=Mali&p=grid&tl=country
    name: Mali
    geo: mali
    level: country
    coords:
      - -2.2900239
      - 16.3700359
    org:
      name: Africa CDC PGI
      url: https://africacdc.org/institutes/ipg/

  - url: https://nextstrain.org/groups/africa-cdc/ncov/niger?c=clade_membership&f_country=Niger&p=grid&tl=country
    name: Niger
    geo: niger
    level: country
    coords:
      - 10.145544
      - 18.061703
    org:
      name: Africa CDC PGI
      url: https://africacdc.org/institutes/ipg/

  - url: https://nextstrain.org/groups/africa-cdc/ncov/nigeria?c=clade_membership&f_country=Nigeria&p=grid&tl=country
    name: Nigeria
    geo: nigeria
    level: country
    coords:
      - 8.0
      - 10.0
    org:
      name: Africa CDC PGI
      url: https://africacdc.org/institutes/ipg/

  - url: https://nextstrain.org/groups/africa-cdc/ncov/senegal?c=clade_membership&f_country=Senegal&p=grid&tl=country
    name: Senegal
    geo: senegal
    level: country
    coords:
      - -14.25
      - 14.5
    org:
      name: Africa CDC PGI
      url: https://africacdc.org/institutes/ipg/

  - url: https://nextstrain.org/groups/africa-cdc/ncov/sierra-leone?c=clade_membership&f_country=Sierra%20Leone&p=grid&tl=country
    name: Sierra Leone
    geo: sierra-leone
    level: country
    coords:
      - -11.8400269
      - 8.6400349
    org:
      name: Africa CDC PGI
      url: https://africacdc.org/institutes/ipg/

  - url: https://nextstrain.org/groups/africa-cdc/ncov/togo?c=clade_membership&f_country=Togo&p=grid&tl=country
    name: Togo
    geo: togo
    level: country
    coords:
      - 1.069709
      - 8.88625
    org:
      name: Africa CDC PGI
      url: https://africacdc.org/institutes/ipg/
