# Copyright 2009 by Osvaldo Zagordi.  All rights reserved.
#
# This file is part of the Biopython distribution and governed by your
# choice of the "Biopython License Agreement" or the "BSD 3-Clause License".
# Please see the LICENSE file that should have been included as part of this
# package.
"""Command line wrappers for short read aligners (REMOVED).

Bio.Sequencing.Applications has been removed from Biopython. It provided the Novoalign and SAMtools wrappers. It wrapped command line tools through ``Bio.Application``, which was declared obsolete in release 1.79, deprecated in 1.82, and removed in 1.86. Call the tool with the standard library ``subprocess`` module instead. See DEPRECATED.rst.
"""

raise ImportError(
    "Bio.Sequencing.Applications has been removed from Biopython. It provided the Novoalign and SAMtools wrappers. It wrapped command line tools through ``Bio.Application``, which was declared obsolete in release 1.79, deprecated in 1.82, and removed in 1.86. Call the tool with the standard library ``subprocess`` module instead. See DEPRECATED.rst."
)
